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PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 [ Canis lupus familiaris (dog) ]

Gene ID: 480656, updated on 5-Mar-2024

Summary

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Official Symbol
PAFAH1B1provided by VGNC
Official Full Name
platelet activating factor acetylhydrolase 1b regulatory subunit 1provided by VGNC
Primary source
VGNC:VGNC:44239
See related
Ensembl:ENSCAFG00845014548
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PAFAH1B1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (47482963..47566431)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (45800900..45884016)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (46599366..46680302)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (46250595..46333659)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (46544618..46627828)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene methyltransferase 16, RNA N6-adenosine Neighboring gene uncharacterized LOC119873435 Neighboring gene uncharacterized LOC119873338 Neighboring gene clustered mitochondria homolog Neighboring gene coiled-coil domain containing 92B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
platelet-activating factor acetylhydrolase IB subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    47482963..47566431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038677746.1 → XP_038533674.1  platelet-activating factor acetylhydrolase IB subunit beta

    UniProtKB/TrEMBL
    A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2
    Related
    ENSCAFP00845020543.1, ENSCAFT00845026052.1
    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH

  2. XM_038677747.1 → XP_038533675.1  platelet-activating factor acetylhydrolase IB subunit beta

    UniProtKB/TrEMBL
    A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2
    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    46250595..46333659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038486664.1 → XP_038342592.1  platelet-activating factor acetylhydrolase IB subunit beta

    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH

  2. XM_038486665.1 → XP_038342593.1  platelet-activating factor acetylhydrolase IB subunit beta

    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    46544618..46627828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038612470.1 → XP_038468398.1  platelet-activating factor acetylhydrolase IB subunit beta

    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH

  2. XM_038612471.1 → XP_038468399.1  platelet-activating factor acetylhydrolase IB subunit beta

    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    46599366..46680302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038548533.1 → XP_038404461.1  platelet-activating factor acetylhydrolase IB subunit beta

    UniProtKB/TrEMBL
    A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2
    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH

  2. XM_038548534.1 → XP_038404462.1  platelet-activating factor acetylhydrolase IB subunit beta

    UniProtKB/TrEMBL
    A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2
    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    45800900..45884016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_849389.5 → XP_854482.1  platelet-activating factor acetylhydrolase IB subunit beta

    See identical proteins and their annotated locations for XP_854482.1

    UniProtKB/TrEMBL
    A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2
    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH

  2. XM_005624952.4 → XP_005625009.1  platelet-activating factor acetylhydrolase IB subunit beta

    See identical proteins and their annotated locations for XP_005625009.1

    UniProtKB/TrEMBL
    A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2
    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH
Nucleotide Protein
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