U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FDPS farnesyl diphosphate synthase [ Canis lupus familiaris (dog) ]

Gene ID: 480129, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
FDPSprovided by VGNC
Official Full Name
farnesyl diphosphate synthaseprovided by VGNC
Primary source
VGNC:VGNC:40812
See related
Ensembl:ENSCAFG00845011910
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 7 NC_051811.1 (42110187..42119478, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 7 NC_006589.4 (41731911..41741200, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 7 NC_049228.1 (42227832..42237121, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 7 NC_049267.1 (41890063..41899349, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 7 NC_049748.1 (41943839..41953128, complement)

Chromosome 7 - NC_051811.1Genomic Context describing neighboring genes Neighboring gene ASH1 like histone lysine methyltransferase Neighboring gene RUN and SH3 domain containing 1 Neighboring gene pyruvate kinase L/R Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3 Neighboring gene CDC like kinase 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
farnesyl pyrophosphate synthase
Names
farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase)
XP_005622779.1
XP_005622784.1
XP_005622788.1
XP_013970816.2
XP_013970817.1
XP_013970819.1
XP_038337655.1
XP_038337656.1
XP_038337657.1
XP_038337658.1
XP_038337659.1
XP_038337660.1
XP_038337661.1
XP_038337662.1
XP_038399030.1
XP_038399031.1
XP_038399032.1
XP_038399033.1
XP_038399034.1
XP_038399035.1
XP_038399036.1
XP_038399037.1
XP_038427257.1
XP_038427262.1
XP_038463140.1
XP_038463141.1
XP_038463142.1
XP_038463143.1
XP_038463144.1
XP_038463145.1
XP_038463146.1
XP_038463147.1
XP_038527863.1
XP_038527864.1
XP_038527865.1
XP_038527866.1
XP_038527867.1
XP_038527868.1
XP_038527869.1
XP_038527870.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051811.1 Reference ROS_Cfam_1.0

    Range
    42110187..42119478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038671941.1 → XP_038527869.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_038671939.1 → XP_038527867.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Related
    ENSCAFP00845016662.1, ENSCAFT00845021194.1
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_038671936.1 → XP_038527864.1  farnesyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A8C0JZM9, A0A8C0PL88, A0A8I3NF82
    Conserved Domains (1) summary
    pfam00348
    Location:109 → 375
    polyprenyl_synt; Polyprenyl synthetase

  4. XM_038671935.1 → XP_038527863.1  farnesyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A8C0JZM9, A0A8C0PL88, A0A8I3NF82
    Related
    ENSCAFP00845016719.1, ENSCAFT00845021260.1
    Conserved Domains (1) summary
    pfam00348
    Location:109 → 375
    polyprenyl_synt; Polyprenyl synthetase

  5. XM_038671942.1 → XP_038527870.1  farnesyl pyrophosphate synthase isoform X4

    Conserved Domains (1) summary
    pfam00348
    Location:1 → 203
    polyprenyl_synt; Polyprenyl synthetase

  6. XM_038671937.1 → XP_038527865.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A8C0JZM9, A0A8C0PNY5
    Conserved Domains (1) summary
    pfam00348
    Location:102 → 368
    polyprenyl_synt; Polyprenyl synthetase

  7. XM_038671940.1 → XP_038527868.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  8. XM_038671938.1 → XP_038527866.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049267.1 Alternate UMICH_Zoey_3.1

    Range
    41890063..41899349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038481733.1 → XP_038337661.1  farnesyl pyrophosphate synthase isoform X3

    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_038481731.1 → XP_038337659.1  farnesyl pyrophosphate synthase isoform X3

    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_038481728.1 → XP_038337656.1  farnesyl pyrophosphate synthase isoform X1

    Conserved Domains (1) summary
    pfam00348
    Location:109 → 375
    polyprenyl_synt; Polyprenyl synthetase

  4. XM_038481727.1 → XP_038337655.1  farnesyl pyrophosphate synthase isoform X1

    Conserved Domains (1) summary
    pfam00348
    Location:109 → 375
    polyprenyl_synt; Polyprenyl synthetase

  5. XM_038481734.1 → XP_038337662.1  farnesyl pyrophosphate synthase isoform X4

    Conserved Domains (1) summary
    pfam00348
    Location:1 → 203
    polyprenyl_synt; Polyprenyl synthetase

  6. XM_038481729.1 → XP_038337657.1  farnesyl pyrophosphate synthase isoform X2

    Conserved Domains (1) summary
    pfam00348
    Location:102 → 368
    polyprenyl_synt; Polyprenyl synthetase

  7. XM_038481732.1 → XP_038337660.1  farnesyl pyrophosphate synthase isoform X3

    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  8. XM_038481730.1 → XP_038337658.1  farnesyl pyrophosphate synthase isoform X3

    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049748.1 Alternate UNSW_CanFamBas_1.0

    Range
    41943839..41953128 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038607218.1 → XP_038463146.1  farnesyl pyrophosphate synthase isoform X3

    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_038607216.1 → XP_038463144.1  farnesyl pyrophosphate synthase isoform X3

    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_038607213.1 → XP_038463141.1  farnesyl pyrophosphate synthase isoform X1

    Conserved Domains (1) summary
    pfam00348
    Location:109 → 375
    polyprenyl_synt; Polyprenyl synthetase

  4. XM_038607212.1 → XP_038463140.1  farnesyl pyrophosphate synthase isoform X1

    Conserved Domains (1) summary
    pfam00348
    Location:109 → 375
    polyprenyl_synt; Polyprenyl synthetase

  5. XM_038607219.1 → XP_038463147.1  farnesyl pyrophosphate synthase isoform X4

    Conserved Domains (1) summary
    pfam00348
    Location:1 → 203
    polyprenyl_synt; Polyprenyl synthetase

  6. XM_038607214.1 → XP_038463142.1  farnesyl pyrophosphate synthase isoform X2

    Conserved Domains (1) summary
    pfam00348
    Location:102 → 368
    polyprenyl_synt; Polyprenyl synthetase

  7. XM_038607217.1 → XP_038463145.1  farnesyl pyrophosphate synthase isoform X3

    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  8. XM_038607215.1 → XP_038463143.1  farnesyl pyrophosphate synthase isoform X3

    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049228.1 Alternate UU_Cfam_GSD_1.0

    Range
    42227832..42237121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038543108.1 → XP_038399036.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_038543106.1 → XP_038399034.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_038543103.1 → XP_038399031.1  farnesyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A8C0JZM9, A0A8C0PL88, A0A8I3NF82
    Conserved Domains (1) summary
    pfam00348
    Location:109 → 375
    polyprenyl_synt; Polyprenyl synthetase

  4. XM_038543102.1 → XP_038399030.1  farnesyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A8C0JZM9, A0A8C0PL88, A0A8I3NF82
    Conserved Domains (1) summary
    pfam00348
    Location:109 → 375
    polyprenyl_synt; Polyprenyl synthetase

  5. XM_038543109.1 → XP_038399037.1  farnesyl pyrophosphate synthase isoform X4

    Conserved Domains (1) summary
    pfam00348
    Location:1 → 203
    polyprenyl_synt; Polyprenyl synthetase

  6. XM_038543104.1 → XP_038399032.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A8C0JZM9, A0A8C0PNY5
    Conserved Domains (1) summary
    pfam00348
    Location:102 → 368
    polyprenyl_synt; Polyprenyl synthetase

  7. XM_038543107.1 → XP_038399035.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  8. XM_038543105.1 → XP_038399033.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006589.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    41731911..41741200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005622727.4 → XP_005622784.1  farnesyl pyrophosphate synthase isoform X3

    See identical proteins and their annotated locations for XP_005622784.1

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_014115344.3 → XP_013970819.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_005622722.4 → XP_005622779.1  farnesyl pyrophosphate synthase isoform X1

    See identical proteins and their annotated locations for XP_005622779.1

    UniProtKB/TrEMBL
    A0A8C0JZM9, A0A8C0PL88, A0A8I3NF82
    Conserved Domains (1) summary
    pfam00348
    Location:109 → 375
    polyprenyl_synt; Polyprenyl synthetase

  4. XM_014115342.3 → XP_013970817.1  farnesyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A8C0JZM9, A0A8C0PL88, A0A8I3NF82
    Conserved Domains (1) summary
    pfam00348
    Location:109 → 375
    polyprenyl_synt; Polyprenyl synthetase

  5. XM_005622731.4 → XP_005622788.1  farnesyl pyrophosphate synthase isoform X4

    Conserved Domains (1) summary
    pfam00348
    Location:1 → 203
    polyprenyl_synt; Polyprenyl synthetase

  6. XM_014115341.3 → XP_013970816.2  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A8C0JZM9, A0A8C0PNY5
    Conserved Domains (1) summary
    pfam00348
    Location:102 → 368
    polyprenyl_synt; Polyprenyl synthetase

  7. XM_038571334.1 → XP_038427262.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  8. XM_038571329.1 → XP_038427257.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NKA5, A0A8P0SKZ4
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.