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GTF2B general transcription factor IIB [ Canis lupus familiaris (dog) ]

Gene ID: 479960, updated on 5-Mar-2024

Summary

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Official Symbol
GTF2Bprovided by VGNC
Official Full Name
general transcription factor IIBprovided by VGNC
Primary source
VGNC:VGNC:41543
See related
Ensembl:ENSCAFG00845018664
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (60003234..60038110)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (62200289..62235125)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (60009800..60044657)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (59568745..59603586)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (59524029..59558856)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111096409 Neighboring gene U4 spliceosomal RNA Neighboring gene kynurenine aminotransferase 3 Neighboring gene RING-box protein 2-like Neighboring gene serine/arginine-rich splicing factor 10-like Neighboring gene protein kinase N2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor IIB
XP_038336061.1
XP_038397385.1
XP_038461522.1
XP_038526135.1
XP_537085.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    60003234..60038110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038670207.1 → XP_038526135.1  transcription initiation factor IIB

    UniProtKB/TrEMBL
    A0A8C0KLJ4, A0A8C0NUF2, A0A8I3P1A2
    Related
    ENSCAFP00845025880.1, ENSCAFT00845033064.1
    Conserved Domains (1) summary
    COG1405
    Location:14 → 290
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    59568745..59603586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038480133.1 → XP_038336061.1  transcription initiation factor IIB

    Conserved Domains (1) summary
    COG1405
    Location:14 → 290
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    59524029..59558856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038605594.1 → XP_038461522.1  transcription initiation factor IIB

    Conserved Domains (1) summary
    COG1405
    Location:14 → 290
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    60009800..60044657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038541457.1 → XP_038397385.1  transcription initiation factor IIB

    UniProtKB/TrEMBL
    A0A8C0KLJ4, A0A8C0NUF2, A0A8I3P1A2
    Conserved Domains (1) summary
    COG1405
    Location:14 → 290
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    62200289..62235125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_537085.7 → XP_537085.1  transcription initiation factor IIB

    See identical proteins and their annotated locations for XP_537085.1

    UniProtKB/TrEMBL
    A0A8C0KLJ4, A0A8C0NUF2, A0A8I3P1A2
    Conserved Domains (1) summary
    COG1405
    Location:14 → 290
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Nucleotide Protein
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