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AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase [ Canis lupus familiaris (dog) ]

Gene ID: 479931, updated on 5-Mar-2024

Summary

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Official Symbol
AGLprovided by VGNC
Official Full Name
amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferaseprovided by VGNC
Primary source
VGNC:VGNC:37704
See related
Ensembl:ENSCAFG00845013603
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See AGL in Genome Data Viewer
Location:
chromosome: 6
Exon count:
37
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (50395404..50468323, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (52720444..52790584, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (50499977..50570258, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (50089271..50159524, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (50068211..50138107, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member A3 Neighboring gene condensin complex subunit 1-like Neighboring gene small nucleolar RNA U3 Neighboring gene ubiquitin-conjugating enzyme E2 N-like Neighboring gene ferric chelate reductase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-alpha-glucanotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amylo-alpha-1,6-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen debranching enzyme
Names
amylo-1, 6-glucosidase, 4-alpha-glucanotransferase
glycogen debrancher
NP_001041561.1
XP_038523512.1
XP_038523513.1
XP_038523514.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001048096.1 → NP_001041561.1  glycogen debranching enzyme

    See identical proteins and their annotated locations for NP_001041561.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ307574
    UniProtKB/Swiss-Prot
    Q2PQH8
    UniProtKB/TrEMBL
    A0A8C0NRI8, A0A8P0STI5
    Conserved Domains (5) summary
    cd11327
    Location:105 → 584
    AmyAc_Glg_debranch_2; Alpha amylase catalytic domain found in glycogen debranching enzymes
    TIGR01531
    Location:22 → 1533
    glyc_debranch; glycogen debranching enzymye
    pfam06202
    Location:1074 → 1528
    GDE_C; Amylo-alpha-1,6-glucosidase
    pfam14699
    Location:31 → 116
    hGDE_N; N-terminal domain from the human glycogen debranching enzyme
    pfam14702
    Location:698 → 975
    hGDE_central; central domain of human glycogen debranching enzyme

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    50395404..50468323 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038667586.1 → XP_038523514.1  glycogen debranching enzyme isoform X1

    UniProtKB/TrEMBL
    A0A8C0NRI8, A0A8C0NVS9, A0A8I3P0C9, A0A8P0STI5
    Conserved Domains (1) summary
    TIGR01531
    Location:22 → 1533
    glyc_debranch; glycogen debranching enzymye

  2. XM_038667584.1 → XP_038523512.1  glycogen debranching enzyme isoform X1

    UniProtKB/TrEMBL
    A0A8C0NRI8, A0A8C0NVS9, A0A8I3P0C9, A0A8P0STI5
    Related
    ENSCAFP00845019069.1, ENSCAFT00845024274.1
    Conserved Domains (1) summary
    TIGR01531
    Location:22 → 1533
    glyc_debranch; glycogen debranching enzymye

  3. XM_038667585.1 → XP_038523513.1  glycogen debranching enzyme isoform X1

    UniProtKB/TrEMBL
    A0A8C0NRI8, A0A8C0NVS9, A0A8I3P0C9, A0A8P0STI5
    Conserved Domains (1) summary
    TIGR01531
    Location:22 → 1533
    glyc_debranch; glycogen debranching enzymye

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    50089271..50159524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    50068211..50138107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    50499977..50570258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    52720444..52790584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2PQH8.1 GenPept UniProtKB/Swiss-Prot:Q2PQH8

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