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PPARGC1A PPARG coactivator 1 alpha [ Canis lupus familiaris (dog) ]

Gene ID: 479127, updated on 5-Mar-2024

Summary

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Official Symbol
PPARGC1Aprovided by VGNC
Official Full Name
PPARG coactivator 1 alphaprovided by VGNC
Primary source
VGNC:VGNC:44837
See related
Ensembl:ENSCAFG00845008311
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (86620570..87261415)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (88158508..88796824)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (86243892..86883362)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (85752591..86391823)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (85858991..86497911)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene superoxide dismutase 3 Neighboring gene DEAH-box helicase 15 Neighboring gene uncharacterized LOC102155363 Neighboring gene uncharacterized LOC111095404 Neighboring gene uncharacterized LOC119870879

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome proliferator-activated receptor gamma coactivator 1-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    86620570..87261415
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038662073.1 → XP_038518001.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  2. XM_038662078.1 → XP_038518006.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X4

    UniProtKB/TrEMBL
    A0A8C0PW93
    Conserved Domains (1) summary
    cd12623
    Location:663 → 753
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  3. XM_038662071.1 → XP_038517999.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  4. XM_038662072.1 → XP_038518000.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  5. XM_038662075.1 → XP_038518003.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  6. XM_038662074.1 → XP_038518002.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  7. XM_038662077.1 → XP_038518005.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C0M3T2, A0A8I3NBJ6, A0A8I3RUL9, A0A8P0T369
    Related
    ENSCAFP00845011597.1, ENSCAFT00845014958.1
    Conserved Domains (1) summary
    cd12623
    Location:672 → 762
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  8. XM_038662076.1 → XP_038518004.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C0M294, A0A8I3NBJ6, A0A8P0T369
    Related
    ENSCAFP00845011726.1, ENSCAFT00845015106.1
    Conserved Domains (1) summary
    cd12623
    Location:673 → 763
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    85752591..86391823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038472582.1 → XP_038328510.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  2. XM_038472587.1 → XP_038328515.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X4

    Conserved Domains (1) summary
    cd12623
    Location:663 → 753
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  3. XM_038472580.1 → XP_038328508.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  4. XM_038472581.1 → XP_038328509.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  5. XM_038472584.1 → XP_038328512.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  6. XM_038472583.1 → XP_038328511.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  7. XM_038472586.1 → XP_038328514.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X3

    Conserved Domains (1) summary
    cd12623
    Location:672 → 762
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  8. XM_038472585.1 → XP_038328513.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X2

    Conserved Domains (1) summary
    cd12623
    Location:673 → 763
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    85858991..86497911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038597850.1 → XP_038453778.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  2. XM_038597855.1 → XP_038453783.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X4

    Conserved Domains (1) summary
    cd12623
    Location:663 → 753
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  3. XM_038597848.1 → XP_038453776.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  4. XM_038597849.1 → XP_038453777.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  5. XM_038597852.1 → XP_038453780.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  6. XM_038597851.1 → XP_038453779.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  7. XM_038597854.1 → XP_038453782.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X3

    Conserved Domains (1) summary
    cd12623
    Location:672 → 762
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  8. XM_038597853.1 → XP_038453781.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X2

    Conserved Domains (1) summary
    cd12623
    Location:673 → 763
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    86243892..86883362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038533568.1 → XP_038389496.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  2. XM_038533573.1 → XP_038389501.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X4

    UniProtKB/TrEMBL
    A0A8C0PW93
    Conserved Domains (1) summary
    cd12623
    Location:663 → 753
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  3. XM_038533566.1 → XP_038389494.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  4. XM_038533567.1 → XP_038389495.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  5. XM_038533570.1 → XP_038389498.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  6. XM_038533569.1 → XP_038389497.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  7. XM_038533572.1 → XP_038389500.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C0M3T2, A0A8I3NBJ6, A0A8I3RUL9, A0A8P0T369
    Conserved Domains (1) summary
    cd12623
    Location:672 → 762
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  8. XM_038533571.1 → XP_038389499.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C0M294, A0A8I3NBJ6, A0A8P0T369
    Conserved Domains (1) summary
    cd12623
    Location:673 → 763
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    88158508..88796824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038482187.1 → XP_038338115.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  2. XM_014112658.3 → XP_013968133.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X4

    UniProtKB/TrEMBL
    A0A8C0PW93
    Conserved Domains (1) summary
    cd12623
    Location:663 → 753
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  3. XM_038482175.1 → XP_038338103.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  4. XM_022417271.2 → XP_022272979.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  5. XM_038482198.1 → XP_038338126.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  6. XM_038482189.1 → XP_038338117.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8I3MZ45, A0A8P0SPM2
    Conserved Domains (1) summary
    cd12623
    Location:680 → 770
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  7. XM_005618656.4 → XP_005618713.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C0M3T2, A0A8I3NBJ6, A0A8I3RUL9, A0A8P0T369
    Conserved Domains (1) summary
    cd12623
    Location:672 → 762
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

  8. XM_846648.6 → XP_851741.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C0M294, A0A8I3NBJ6, A0A8P0T369
    Conserved Domains (1) summary
    cd12623
    Location:673 → 763
    RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins
Nucleotide Protein
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