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HTT huntingtin [ Canis lupus familiaris (dog) ]

Gene ID: 479074, updated on 5-Mar-2024

Summary

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Official Symbol
HTTprovided by VGNC
Official Full Name
huntingtinprovided by VGNC
Primary source
VGNC:VGNC:41839
See related
Ensembl:ENSCAFG00845011174
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
HD
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
67
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (61552532..61697091, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (63660661..63805148, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (61608204..61752888, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (61044140..61188581, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (61248468..61393186, complement)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene HGF activator Neighboring gene regulator of G protein signaling 12 Neighboring gene Myb/SANT DNA binding domain containing 1 Neighboring gene G protein-coupled receptor kinase 4 Neighboring gene 40S ribosomal protein S15a-like Neighboring gene 40S ribosomal protein S16-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in microtubule-based transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
huntingtin
Names
huntingtin (Huntington disease)
solute carrier family 6 (neurotransmitter transporter, serotonin), member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    61552532..61697091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038661694.1 → XP_038517622.1  huntingtin isoform X2

    UniProtKB/TrEMBL
    A0A8C0M2Z1, A0A8C0Q3X4
    Conserved Domains (2) summary
    sd00044
    Location:115 → 137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1466 → 1506
    DUF3652; Huntingtin protein region

  2. XM_038661693.1 → XP_038517621.1  huntingtin isoform X1

    UniProtKB/TrEMBL
    A0A8C0M183
    Related
    ENSCAFP00845015538.1, ENSCAFT00845019844.1
    Conserved Domains (2) summary
    sd00044
    Location:115 → 137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1503 → 1543
    DUF3652; Huntingtin protein region

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    61044140..61188581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038472221.1 → XP_038328149.1  huntingtin isoform X2

    Conserved Domains (2) summary
    sd00044
    Location:115 → 137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1466 → 1506
    DUF3652; Huntingtin protein region

  2. XM_038472220.1 → XP_038328148.1  huntingtin isoform X1

    Conserved Domains (2) summary
    sd00044
    Location:115 → 137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1503 → 1543
    DUF3652; Huntingtin protein region

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    61248468..61393186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038597511.1 → XP_038453439.1  huntingtin isoform X2

    Conserved Domains (2) summary
    sd00044
    Location:115 → 137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1466 → 1506
    DUF3652; Huntingtin protein region

  2. XM_038597510.1 → XP_038453438.1  huntingtin isoform X1

    Conserved Domains (2) summary
    sd00044
    Location:115 → 137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1503 → 1543
    DUF3652; Huntingtin protein region

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    61608204..61752888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038533184.1 → XP_038389112.1  huntingtin isoform X2

    UniProtKB/TrEMBL
    A0A8C0M2Z1, A0A8C0Q3X4
    Conserved Domains (2) summary
    sd00044
    Location:115 → 137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1466 → 1506
    DUF3652; Huntingtin protein region

  2. XM_038533183.1 → XP_038389111.1  huntingtin isoform X1

    UniProtKB/TrEMBL
    A0A8C0M183
    Conserved Domains (2) summary
    sd00044
    Location:115 → 137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1503 → 1543
    DUF3652; Huntingtin protein region

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    63660661..63805148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014112541.3 → XP_013968016.1  huntingtin isoform X2

    UniProtKB/TrEMBL
    A0A8C0M2Z1, A0A8C0Q3X4
    Conserved Domains (2) summary
    sd00044
    Location:115 → 137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1466 → 1506
    DUF3652; Huntingtin protein region

  2. XM_536221.6 → XP_536221.2  huntingtin isoform X1

    UniProtKB/TrEMBL
    A0A8C0M183
    Conserved Domains (2) summary
    sd00044
    Location:115 → 137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1503 → 1543
    DUF3652; Huntingtin protein region
Nucleotide Protein
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