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LOC479011 Y-box-binding protein 1 [ Canis lupus familiaris (dog) ]

Gene ID: 479011, updated on 22-Jan-2024

Summary

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Gene symbol
LOC479011
Gene description
Y-box-binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (36066298..36067563, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (38367255..38368545, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (36006410..36007668, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (35588854..35590112, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (35858177..35859439, complement)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD115 Neighboring gene small nucleolar RNA SNORD115 Neighboring gene small nucleolar RNA SNORD116 Neighboring gene small nucleolar RNA SNORD116

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Y-box protein-1 is a transcriptional regulator of BMP7. Wang S, et al. J Cell Biochem, 2011 Apr. PMID 21308742, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of messenger ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclease-sensitive element-binding protein 1; LOW QUALITY PROTEIN: Y-box-binding protein 1; Y-box-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    36066298..36067563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038661102.1 → XP_038517030.1  Y-box-binding protein 1

    UniProtKB/TrEMBL
    A0A8C0JNW4, A0A8C0LF63, A0A8C0MGN4
    Conserved Domains (1) summary
    pfam00313
    Location:62 → 131
    CSD; 'Cold-shock' DNA-binding domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    35588854..35590112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038471665.1 → XP_038327593.1  Y-box-binding protein 1

    Conserved Domains (1) summary
    pfam00313
    Location:61 → 130
    CSD; 'Cold-shock' DNA-binding domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    35858177..35859439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038596895.1 → XP_038452823.1  LOW QUALITY PROTEIN: Y-box-binding protein 1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    36006410..36007668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038532590.1 → XP_038388518.1  LOW QUALITY PROTEIN: Y-box-binding protein 1

    UniProtKB/TrEMBL
    A0A8C0JNW4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    38367255..38368545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005618235.4 → XP_005618292.2  Y-box-binding protein 1

    UniProtKB/TrEMBL
    A0A8C0JNW4
    Conserved Domains (1) summary
    pfam00313
    Location:61 → 130
    CSD; 'Cold-shock' DNA-binding domain
Nucleotide Protein
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