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RXRG retinoid X receptor gamma [ Canis lupus familiaris (dog) ]

Gene ID: 478989, updated on 5-Mar-2024

Summary

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Official Symbol
RXRGprovided by VGNC
Official Full Name
retinoid X receptor gammaprovided by VGNC
Primary source
VGNC:VGNC:45819
See related
Ensembl:ENSCAFG00845024833
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 38
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 38 NC_051842.1 (17947065..17992337)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 38 NC_006620.4 (17922970..17968200)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 38 NC_049259.1 (18565728..18610954)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 38 NC_049298.1 (17919625..17964835)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 38 NC_049779.1 (18271342..18316575)

Chromosome 38 - NC_051842.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119868056 Neighboring gene uncharacterized LOC102152982 Neighboring gene leucine rich repeat containing 52 Neighboring gene uncharacterized LOC119868085 Neighboring gene uncharacterized LOC102153440 Neighboring gene LIM homeobox transcription factor 1 alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparison of the expression patterns of newly identified zebrafish retinoic acid and retinoid X receptors. Waxman JS, et al. Dev Dyn, 2007 Feb. PMID 17195188

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051842.1 Reference ROS_Cfam_1.0

    Range
    17947065..17992337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038448544.1 → XP_038304472.1  retinoic acid receptor RXR-gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C0JMH8, A0A8C0PBD5, A0A8C0Z0Z0, A0A8I3PIS2
    Related
    ENSCAFP00845034329.1, ENSCAFT00845043809.1
    Conserved Domains (3) summary
    cd06943
    Location:233 → 441
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:137 → 213
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:25 → 133
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_038448542.1 → XP_038304470.1  retinoic acid receptor RXR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8I3PJP1, A0A8I3PNM7
    Conserved Domains (3) summary
    cd06943
    Location:274 → 482
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:178 → 254
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:66 → 174
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_038448541.1 → XP_038304469.1  retinoic acid receptor RXR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8I3PJP1, A0A8I3PNM7
    Related
    ENSCAFP00845034504.1, ENSCAFT00845044032.1
    Conserved Domains (3) summary
    cd06943
    Location:274 → 482
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:178 → 254
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:66 → 174
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  4. XM_038448543.1 → XP_038304471.1  retinoic acid receptor RXR-gamma isoform X2

    UniProtKB/TrEMBL
    A0A8I3PNM7
    Related
    ENSCAFP00845034591.1, ENSCAFT00845044145.1
    Conserved Domains (3) summary
    cd06943
    Location:246 → 454
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:150 → 226
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:38 → 146
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  5. XM_038448546.1 → XP_038304474.1  retinoic acid receptor RXR-gamma isoform X4

    Conserved Domains (2) summary
    cd06943
    Location:110 → 318
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:14 → 90
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

  6. XM_038448545.1 → XP_038304473.1  retinoic acid receptor RXR-gamma isoform X4

    Conserved Domains (2) summary
    cd06943
    Location:110 → 318
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:14 → 90
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049298.1 Alternate UMICH_Zoey_3.1

    Range
    17919625..17964835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038522432.1 → XP_038378360.1  retinoic acid receptor RXR-gamma isoform X3

    Conserved Domains (3) summary
    cd06943
    Location:233 → 441
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:137 → 213
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:25 → 133
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_038522430.1 → XP_038378358.1  retinoic acid receptor RXR-gamma isoform X1

    Conserved Domains (3) summary
    cd06943
    Location:274 → 482
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:178 → 254
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:66 → 174
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_038522429.1 → XP_038378357.1  retinoic acid receptor RXR-gamma isoform X1

    Conserved Domains (3) summary
    cd06943
    Location:274 → 482
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:178 → 254
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:66 → 174
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  4. XM_038522431.1 → XP_038378359.1  retinoic acid receptor RXR-gamma isoform X2

    Conserved Domains (3) summary
    cd06943
    Location:246 → 454
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:150 → 226
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:38 → 146
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  5. XM_038522434.1 → XP_038378362.1  retinoic acid receptor RXR-gamma isoform X4

    Conserved Domains (2) summary
    cd06943
    Location:110 → 318
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:14 → 90
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

  6. XM_038522433.1 → XP_038378361.1  retinoic acid receptor RXR-gamma isoform X4

    Conserved Domains (2) summary
    cd06943
    Location:110 → 318
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:14 → 90
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049779.1 Alternate UNSW_CanFamBas_1.0

    Range
    18271342..18316575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038650637.1 → XP_038506565.1  retinoic acid receptor RXR-gamma isoform X3

    Conserved Domains (3) summary
    cd06943
    Location:233 → 441
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:137 → 213
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:25 → 133
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_038650635.1 → XP_038506563.1  retinoic acid receptor RXR-gamma isoform X1

    Conserved Domains (3) summary
    cd06943
    Location:274 → 482
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:178 → 254
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:66 → 174
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_038650634.1 → XP_038506562.1  retinoic acid receptor RXR-gamma isoform X1

    Conserved Domains (3) summary
    cd06943
    Location:274 → 482
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:178 → 254
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:66 → 174
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  4. XM_038650636.1 → XP_038506564.1  retinoic acid receptor RXR-gamma isoform X2

    Conserved Domains (3) summary
    cd06943
    Location:246 → 454
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:150 → 226
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:38 → 146
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  5. XM_038650639.1 → XP_038506567.1  retinoic acid receptor RXR-gamma isoform X4

    Conserved Domains (2) summary
    cd06943
    Location:110 → 318
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:14 → 90
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

  6. XM_038650638.1 → XP_038506566.1  retinoic acid receptor RXR-gamma isoform X4

    Conserved Domains (2) summary
    cd06943
    Location:110 → 318
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:14 → 90
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049259.1 Alternate UU_Cfam_GSD_1.0

    Range
    18565728..18610954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038586224.1 → XP_038442152.1  retinoic acid receptor RXR-gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C0JMH8, A0A8C0PBD5, A0A8C0Z0Z0, A0A8I3PIS2
    Conserved Domains (3) summary
    cd06943
    Location:233 → 441
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:137 → 213
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:25 → 133
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_038586222.1 → XP_038442150.1  retinoic acid receptor RXR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8I3PJP1, A0A8I3PNM7
    Conserved Domains (3) summary
    cd06943
    Location:274 → 482
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:178 → 254
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:66 → 174
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_038586221.1 → XP_038442149.1  retinoic acid receptor RXR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8I3PJP1, A0A8I3PNM7
    Conserved Domains (3) summary
    cd06943
    Location:274 → 482
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:178 → 254
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:66 → 174
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  4. XM_038586223.1 → XP_038442151.1  retinoic acid receptor RXR-gamma isoform X2

    UniProtKB/TrEMBL
    A0A8I3PNM7
    Conserved Domains (3) summary
    cd06943
    Location:246 → 454
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:150 → 226
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:38 → 146
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  5. XM_038586226.1 → XP_038442154.1  retinoic acid receptor RXR-gamma isoform X4

    Conserved Domains (2) summary
    cd06943
    Location:110 → 318
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:14 → 90
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

  6. XM_038586225.1 → XP_038442153.1  retinoic acid receptor RXR-gamma isoform X4

    Conserved Domains (2) summary
    cd06943
    Location:110 → 318
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:14 → 90
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006620.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    17922970..17968200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014111278.3 → XP_013966753.1  retinoic acid receptor RXR-gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C0JMH8, A0A8C0PBD5, A0A8C0Z0Z0, A0A8I3PIS2
    Conserved Domains (3) summary
    cd06943
    Location:233 → 441
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:137 → 213
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:25 → 133
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_038464167.1 → XP_038320095.1  retinoic acid receptor RXR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8C0T1Q9, A0A8I3PNM7, A0A8P0PBJ6
    Conserved Domains (3) summary
    cd06943
    Location:274 → 482
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:178 → 254
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:66 → 174
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_005640843.3 → XP_005640900.1  retinoic acid receptor RXR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8C0T1Q9, A0A8I3PNM7, A0A8P0PBJ6
    Conserved Domains (3) summary
    cd06943
    Location:274 → 482
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:178 → 254
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:66 → 174
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  4. XM_014111277.2 → XP_013966752.1  retinoic acid receptor RXR-gamma isoform X2

    UniProtKB/TrEMBL
    A0A8I3PNM7
    Conserved Domains (3) summary
    cd06943
    Location:246 → 454
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:150 → 226
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:38 → 146
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  5. XM_014111280.2 → XP_013966755.1  retinoic acid receptor RXR-gamma isoform X4

    Conserved Domains (2) summary
    cd06943
    Location:110 → 318
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:14 → 90
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

  6. XM_014111279.3 → XP_013966754.1  retinoic acid receptor RXR-gamma isoform X4

    Conserved Domains (2) summary
    cd06943
    Location:110 → 318
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:14 → 90
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
Nucleotide Protein
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