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RNF25 ring finger protein 25 [ Canis lupus familiaris (dog) ]

Gene ID: 478912, updated on 5-Mar-2024

Summary

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Official Symbol
RNF25provided by VGNC
Official Full Name
ring finger protein 25provided by VGNC
Primary source
VGNC:VGNC:45665
See related
Ensembl:ENSCAFG00845027929
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 37
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 37 NC_051841.1 (25282967..25289535, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 37 NC_006619.4 (26086874..26093442, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 37 NC_049258.1 (25142635..25149203, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 37 NC_049297.1 (25187751..25194319, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 37 NC_049778.1 (25122021..25128589, complement)

Chromosome 37 - NC_051841.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 142 Neighboring gene BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone Neighboring gene serine/threonine kinase 36 Neighboring gene uncharacterized LOC119867962 Neighboring gene tubulin tyrosine ligase like 4 Neighboring gene uncharacterized LOC111094371

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF25
XP_038303883.1
XP_038377869.1
XP_038441675.1
XP_038506055.1
XP_536071.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051841.1 Reference ROS_Cfam_1.0

    Range
    25282967..25289535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038447955.1 → XP_038303883.1  E3 ubiquitin-protein ligase RNF25

    UniProtKB/TrEMBL
    A0A8C0LNA1, A0A8C0LS62, A0A8C0MMW7, A0A8I3PUP5
    Related
    ENSCAFP00845038692.1, ENSCAFT00845049305.1
    Conserved Domains (3) summary
    smart00591
    Location:19 → 128
    RWD; domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
    PHA03247
    Location:264 → 445
    PHA03247; large tegument protein UL36; Provisional
    cd16470
    Location:134 → 203
    RING-H2_RNF25; RING finger, H2 subclass, found in RING finger protein 25 (RNF25) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049297.1 Alternate UMICH_Zoey_3.1

    Range
    25187751..25194319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038521941.1 → XP_038377869.1  E3 ubiquitin-protein ligase RNF25

    Conserved Domains (3) summary
    smart00591
    Location:19 → 128
    RWD; domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
    PHA03247
    Location:264 → 445
    PHA03247; large tegument protein UL36; Provisional
    cd16470
    Location:134 → 203
    RING-H2_RNF25; RING finger, H2 subclass, found in RING finger protein 25 (RNF25) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049778.1 Alternate UNSW_CanFamBas_1.0

    Range
    25122021..25128589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038650127.1 → XP_038506055.1  E3 ubiquitin-protein ligase RNF25

    Conserved Domains (3) summary
    smart00591
    Location:19 → 128
    RWD; domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
    PHA03247
    Location:264 → 445
    PHA03247; large tegument protein UL36; Provisional
    cd16470
    Location:134 → 203
    RING-H2_RNF25; RING finger, H2 subclass, found in RING finger protein 25 (RNF25) and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049258.1 Alternate UU_Cfam_GSD_1.0

    Range
    25142635..25149203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038585747.1 → XP_038441675.1  E3 ubiquitin-protein ligase RNF25

    UniProtKB/TrEMBL
    A0A8C0LNA1, A0A8C0LS62, A0A8C0MMW7, A0A8I3PUP5
    Conserved Domains (3) summary
    smart00591
    Location:19 → 128
    RWD; domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
    PHA03247
    Location:264 → 445
    PHA03247; large tegument protein UL36; Provisional
    cd16470
    Location:134 → 203
    RING-H2_RNF25; RING finger, H2 subclass, found in RING finger protein 25 (RNF25) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006619.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    26086874..26093442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_536071.7 → XP_536071.2  E3 ubiquitin-protein ligase RNF25

    UniProtKB/TrEMBL
    A0A8C0LNA1, A0A8C0LS62, A0A8C0MMW7, A0A8I3PUP5
    Conserved Domains (3) summary
    smart00591
    Location:19 → 128
    RWD; domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
    PHA03247
    Location:264 → 445
    PHA03247; large tegument protein UL36; Provisional
    cd16470
    Location:134 → 203
    RING-H2_RNF25; RING finger, H2 subclass, found in RING finger protein 25 (RNF25) and similar proteins
Nucleotide Protein
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