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CIR1 corepressor interacting with RBPJ, CIR1 [ Canis lupus familiaris (dog) ]

Gene ID: 478804, updated on 5-Mar-2024

Summary

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Official Symbol
CIR1provided by VGNC
Official Full Name
corepressor interacting with RBPJ, CIR1provided by VGNC
Primary source
VGNC:VGNC:111408
See related
Ensembl:ENSCAFG00845015697
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 36
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 36 NC_051840.1 (18547300..18588986, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 36 NC_006618.4 (18423354..18462172, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 36 NC_049257.1 (18735905..18774872, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 36 NC_049296.1 (18627108..18666132, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 36 NC_049777.1 (18625404..18664459, complement)

Chromosome 36 - NC_051840.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(I) chain-like Neighboring gene Sp9 transcription factor Neighboring gene secernin 3 Neighboring gene G protein-coupled receptor 155

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
corepressor interacting with RBPJ 1
Names
CBF1 (RBPJ) interacting corepressor 1
corepressor interacting with RBPJ, 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051840.1 Reference ROS_Cfam_1.0

    Range
    18547300..18588986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038447102.1 → XP_038303030.1  corepressor interacting with RBPJ 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0RMH2
    Conserved Domains (1) summary
    pfam10197
    Location:13 → 49
    Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR

  2. XM_038447103.1 → XP_038303031.1  corepressor interacting with RBPJ 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0RMH2, A0A8I3NM61
    Related
    ENSCAFP00845022029.1, ENSCAFT00845027989.1
    Conserved Domains (1) summary
    pfam10197
    Location:13 → 49
    Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049296.1 Alternate UMICH_Zoey_3.1

    Range
    18627108..18666132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038521181.1 → XP_038377109.1  corepressor interacting with RBPJ 1 isoform X1

  2. XM_038521182.1 → XP_038377110.1  corepressor interacting with RBPJ 1 isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049777.1 Alternate UNSW_CanFamBas_1.0

    Range
    18625404..18664459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038649302.1 → XP_038505230.1  corepressor interacting with RBPJ 1 isoform X1

  2. XM_038649303.1 → XP_038505231.1  corepressor interacting with RBPJ 1 isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049257.1 Alternate UU_Cfam_GSD_1.0

    Range
    18735905..18774872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038584883.1 → XP_038440811.1  corepressor interacting with RBPJ 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0RMH2

  2. XM_038584884.1 → XP_038440812.1  corepressor interacting with RBPJ 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0RMH2, A0A8C0SR81, A0A8P0TFE7

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006618.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    18423354..18462172 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022414726.2 → XP_022270434.1  corepressor interacting with RBPJ 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0RMH2
    Conserved Domains (1) summary
    pfam10197
    Location:13 → 49
    Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR

  2. XM_535968.7 → XP_535968.2  corepressor interacting with RBPJ 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0RMH2, A0A8C0SR81, A0A8P0TFE7
    Conserved Domains (1) summary
    pfam10197
    Location:13 → 49
    Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR
Nucleotide Protein
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