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GTF2A2 general transcription factor IIA subunit 2 [ Canis lupus familiaris (dog) ]

Gene ID: 478327, updated on 5-Mar-2024

Summary

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Official Symbol
GTF2A2provided by VGNC
Official Full Name
general transcription factor IIA subunit 2provided by VGNC
Primary source
VGNC:VGNC:41542
See related
Ensembl:ENSCAFG00845016636
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 30
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (24671512..24691163, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (24476918..24496309, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (24867205..24886587, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (24597440..24616848, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (24679848..24699256, complement)

Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 81 member A Neighboring gene glucosaminyl (N-acetyl) transferase 3, mucin type Neighboring gene transcription factor BTF3-like Neighboring gene BCL2 interacting protein 2 Neighboring gene uncharacterized LOC111093288

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor IIA subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051834.1 Reference ROS_Cfam_1.0

    Range
    24671512..24691163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038442492.1 → XP_038298420.1  transcription initiation factor IIA subunit 2

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Related
    ENSCAFP00845023196.1, ENSCAFT00845029529.1
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  2. XM_038442495.1 → XP_038298423.1  transcription initiation factor IIA subunit 2

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  3. XM_038442494.1 → XP_038298422.1  transcription initiation factor IIA subunit 2

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  4. XM_038442493.1 → XP_038298421.1  transcription initiation factor IIA subunit 2

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049290.1 Alternate UMICH_Zoey_3.1

    Range
    24597440..24616848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038516953.1 → XP_038372881.1  transcription initiation factor IIA subunit 2

    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  2. XM_038516955.1 → XP_038372883.1  transcription initiation factor IIA subunit 2

    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  3. XM_038516956.1 → XP_038372884.1  transcription initiation factor IIA subunit 2

    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  4. XM_038516954.1 → XP_038372882.1  transcription initiation factor IIA subunit 2

    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

    Range
    24679848..24699256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038644885.1 → XP_038500813.1  transcription initiation factor IIA subunit 2

    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  2. XM_038644887.1 → XP_038500815.1  transcription initiation factor IIA subunit 2

    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  3. XM_038644888.1 → XP_038500816.1  transcription initiation factor IIA subunit 2

    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  4. XM_038644886.1 → XP_038500814.1  transcription initiation factor IIA subunit 2

    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

    Range
    24867205..24886587 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038580573.1 → XP_038436501.1  transcription initiation factor IIA subunit 2

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  2. XM_038580575.1 → XP_038436503.1  transcription initiation factor IIA subunit 2

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  3. XM_038580576.1 → XP_038436504.1  transcription initiation factor IIA subunit 2

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  4. XM_038580574.1 → XP_038436502.1  transcription initiation factor IIA subunit 2

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    24476918..24496309 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_535502.7 → XP_535502.1  transcription initiation factor IIA subunit 2

    See identical proteins and their annotated locations for XP_535502.1

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  2. XM_859374.6 → XP_864467.2  transcription initiation factor IIA subunit 2

    See identical proteins and their annotated locations for XP_864467.2

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  3. XM_038461399.1 → XP_038317327.1  transcription initiation factor IIA subunit 2

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

  4. XM_005638470.3 → XP_005638527.1  transcription initiation factor IIA subunit 2

    See identical proteins and their annotated locations for XP_005638527.1

    UniProtKB/TrEMBL
    A0A8C0KD29, A0A8C0N187
    Conserved Domains (1) summary
    COG5123
    Location:3 → 103
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]
Nucleotide Protein
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