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POLR2C RNA polymerase II subunit C [ Canis lupus familiaris (dog) ]

Gene ID: 478109, updated on 5-Mar-2024

Summary

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Official Symbol
POLR2Cprovided by VGNC
Official Full Name
RNA polymerase II subunit Cprovided by VGNC
Primary source
VGNC:VGNC:44794
See related
Ensembl:ENSCAFG00845003162
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (59491892..59500915, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (55583056..55591977, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (58224470..58233403, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (56323303..56332248, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (57330974..57339943, complement)

Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor G5 Neighboring gene coiled-coil domain containing 102A Neighboring gene docking protein 4 Neighboring gene uncharacterized LOC111092734 Neighboring gene coenzyme Q9 Neighboring gene cytokine induced apoptosis inhibitor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB3
Names
polymerase (RNA) II (DNA directed) polypeptide C, 33kDa
XP_038326076.1
XP_038386890.1
XP_038451110.1
XP_038515194.1
XP_535283.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051806.1 Reference ROS_Cfam_1.0

    Range
    59491892..59500915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038659266.1 → XP_038515194.1  DNA-directed RNA polymerase II subunit RPB3

    UniProtKB/TrEMBL
    A0A8C0K3U1, A0A8C0S8L6, A0A8I3MS03, A0A8I3RSP9
    Related
    ENSCAFP00845004524.1, ENSCAFT00845005704.1
    Conserved Domains (1) summary
    cd07031
    Location:7 → 266
    RNAP_II_RPB3; RPB3 subunit of Eukaryotic RNA polymerase II

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049262.1 Alternate UMICH_Zoey_3.1

    Range
    56323303..56332248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038470148.1 → XP_038326076.1  DNA-directed RNA polymerase II subunit RPB3

    Conserved Domains (1) summary
    cd07031
    Location:7 → 266
    RNAP_II_RPB3; RPB3 subunit of Eukaryotic RNA polymerase II

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

    Range
    57330974..57339943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038595182.1 → XP_038451110.1  DNA-directed RNA polymerase II subunit RPB3

    Conserved Domains (1) summary
    cd07031
    Location:7 → 266
    RNAP_II_RPB3; RPB3 subunit of Eukaryotic RNA polymerase II

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

    Range
    58224470..58233403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038530962.1 → XP_038386890.1  DNA-directed RNA polymerase II subunit RPB3

    UniProtKB/TrEMBL
    A0A8C0K3U1, A0A8C0S8L6, A0A8I3MS03, A0A8I3RSP9
    Conserved Domains (1) summary
    cd07031
    Location:7 → 266
    RNAP_II_RPB3; RPB3 subunit of Eukaryotic RNA polymerase II

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    55583056..55591977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_535283.7 → XP_535283.2  DNA-directed RNA polymerase II subunit RPB3

    See identical proteins and their annotated locations for XP_535283.2

    UniProtKB/TrEMBL
    A0A8C0K3U1, A0A8C0S8L6, A0A8I3MS03, A0A8I3RSP9
    Conserved Domains (1) summary
    cd07031
    Location:7 → 266
    RNAP_II_RPB3; RPB3 subunit of Eukaryotic RNA polymerase II
Nucleotide Protein
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