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LOC478089 general transcription factor IIH subunit 2 [ Canis lupus familiaris (dog) ]

Gene ID: 478089, updated on 22-Jan-2024

Summary

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Gene symbol
LOC478089
Gene description
general transcription factor IIH subunit 2
See related
Ensembl:ENSCAFG00845012879
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
GTF2H2
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Genomic context

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Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (55065783..55092058)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (51520233..51546214)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (53787592..53813579)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (52129948..52155921)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (52896845..52922807)

Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119870033 Neighboring gene MICOS complex subunit MIC27-like Neighboring gene occludin Neighboring gene uncharacterized LOC119870283 Neighboring gene survival motor neuron Neighboring gene uncharacterized LOC119870285 Neighboring gene small EDRK-rich factor 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIH core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription factor IIH subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051806.1 Reference ROS_Cfam_1.0

    Range
    55065783..55092058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038659091.1 → XP_038515019.1  general transcription factor IIH subunit 2

    UniProtKB/TrEMBL
    A0A8C0L458, A0A8C0MEZ4, A0A8I3NN67, A0A8I3NQG1, A0A8P0NA54
    Related
    ENSCAFP00845017970.1, ENSCAFT00845022923.1
    Conserved Domains (2) summary
    COG5151
    Location:11 → 385
    SSL1; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
    cd01453
    Location:56 → 236
    vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...

  2. XM_038659092.1 → XP_038515020.1  general transcription factor IIH subunit 2

    UniProtKB/TrEMBL
    A0A8C0L458, A0A8C0MEZ4, A0A8I3NN67, A0A8I3NQG1, A0A8P0NA54
    Conserved Domains (2) summary
    COG5151
    Location:11 → 385
    SSL1; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
    cd01453
    Location:56 → 236
    vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049262.1 Alternate UMICH_Zoey_3.1

    Range
    52129948..52155921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038469987.1 → XP_038325915.1  general transcription factor IIH subunit 2

    Conserved Domains (2) summary
    COG5151
    Location:11 → 385
    SSL1; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
    cd01453
    Location:56 → 236
    vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...

  2. XM_038469988.1 → XP_038325916.1  general transcription factor IIH subunit 2

    Conserved Domains (2) summary
    COG5151
    Location:11 → 385
    SSL1; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
    cd01453
    Location:56 → 236
    vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

    Range
    52896845..52922807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038595015.1 → XP_038450943.1  general transcription factor IIH subunit 2

    Conserved Domains (2) summary
    COG5151
    Location:11 → 385
    SSL1; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
    cd01453
    Location:56 → 236
    vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...

  2. XM_038595016.1 → XP_038450944.1  general transcription factor IIH subunit 2

    Conserved Domains (2) summary
    COG5151
    Location:11 → 385
    SSL1; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
    cd01453
    Location:56 → 236
    vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

    Range
    53787592..53813579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038530793.1 → XP_038386721.1  general transcription factor IIH subunit 2

    UniProtKB/TrEMBL
    A0A8C0L458, A0A8C0MEZ4, A0A8I3NN67, A0A8I3NQG1, A0A8P0NA54
    Conserved Domains (2) summary
    COG5151
    Location:11 → 385
    SSL1; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
    cd01453
    Location:56 → 236
    vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...

  2. XM_038530794.1 → XP_038386722.1  general transcription factor IIH subunit 2

    UniProtKB/TrEMBL
    A0A8C0L458, A0A8C0MEZ4, A0A8I3NN67, A0A8I3NQG1, A0A8P0NA54
    Conserved Domains (2) summary
    COG5151
    Location:11 → 385
    SSL1; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
    cd01453
    Location:56 → 236
    vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    51520233..51546214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_535266.7 → XP_535266.2  general transcription factor IIH subunit 2

    See identical proteins and their annotated locations for XP_535266.2

    UniProtKB/TrEMBL
    A0A8C0L458, A0A8C0MEZ4, A0A8I3NN67, A0A8I3NQG1, A0A8P0NA54
    Conserved Domains (2) summary
    COG5151
    Location:11 → 385
    SSL1; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
    cd01453
    Location:56 → 236
    vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...

  2. XM_005617466.4 → XP_005617523.1  general transcription factor IIH subunit 2

    See identical proteins and their annotated locations for XP_005617523.1

    UniProtKB/TrEMBL
    A0A8C0L458, A0A8C0MEZ4, A0A8I3NN67, A0A8I3NQG1, A0A8P0NA54
    Conserved Domains (2) summary
    COG5151
    Location:11 → 385
    SSL1; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
    cd01453
    Location:56 → 236
    vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...
Nucleotide Protein
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