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HDAC3 histone deacetylase 3 [ Canis lupus familiaris (dog) ]

Gene ID: 478040, updated on 5-Mar-2024

Summary

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Official Symbol
HDAC3provided by VGNC
Official Full Name
histone deacetylase 3provided by VGNC
Primary source
VGNC:VGNC:50628
See related
Ensembl:ENSCAFG00845016246
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See HDAC3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (37037462..37052393, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (33635234..33650086, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (35730823..35745706, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (34112034..34126890, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (34923559..34938422, complement)

Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene protocadherin gamma-C5 Neighboring gene protocadherin gamma-A12-like Neighboring gene diaphanous related formin 1 Neighboring gene uncharacterized LOC111092023 Neighboring gene uncharacterized LOC119870211 Neighboring gene FCH and double SH3 domains 1 Neighboring gene RELT like 2 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 3
XP_013963424.1
XP_022264469.1
XP_038325591.1
XP_038325592.1
XP_038325593.1
XP_038386370.1
XP_038386371.1
XP_038386372.1
XP_038450603.1
XP_038450604.1
XP_038450605.1
XP_038514649.1
XP_038514650.1
XP_038514651.1
XP_535219.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051806.1 Reference ROS_Cfam_1.0

    Range
    37037462..37052393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038658722.1 → XP_038514650.1  histone deacetylase 3 isoform X2

    Conserved Domains (1) summary
    cd10005
    Location:5 → 369
    HDAC3; Histone deacetylase 3 (HDAC3)

  2. XM_038658721.1 → XP_038514649.1  histone deacetylase 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LAI3, A0A8C0M140, A0A8I3P468
    Related
    ENSCAFP00845022729.1, ENSCAFT00845028887.1
    Conserved Domains (1) summary
    cd10005
    Location:3 → 383
    HDAC3; Histone deacetylase 3 (HDAC3)

  3. XM_038658723.1 → XP_038514651.1  histone deacetylase 3 isoform X3

    Conserved Domains (1) summary
    cd10005
    Location:1 → 360
    HDAC3; Histone deacetylase 3 (HDAC3)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049262.1 Alternate UMICH_Zoey_3.1

    Range
    34112034..34126890 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038469664.1 → XP_038325592.1  histone deacetylase 3 isoform X2

    Conserved Domains (1) summary
    cd10005
    Location:5 → 369
    HDAC3; Histone deacetylase 3 (HDAC3)

  2. XM_038469663.1 → XP_038325591.1  histone deacetylase 3 isoform X1

    Conserved Domains (1) summary
    cd10005
    Location:3 → 383
    HDAC3; Histone deacetylase 3 (HDAC3)

  3. XM_038469665.1 → XP_038325593.1  histone deacetylase 3 isoform X3

    Conserved Domains (1) summary
    cd10005
    Location:1 → 360
    HDAC3; Histone deacetylase 3 (HDAC3)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

    Range
    34923559..34938422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038594676.1 → XP_038450604.1  histone deacetylase 3 isoform X2

    Conserved Domains (1) summary
    cd10005
    Location:5 → 369
    HDAC3; Histone deacetylase 3 (HDAC3)

  2. XM_038594675.1 → XP_038450603.1  histone deacetylase 3 isoform X1

    Conserved Domains (1) summary
    cd10005
    Location:3 → 383
    HDAC3; Histone deacetylase 3 (HDAC3)

  3. XM_038594677.1 → XP_038450605.1  histone deacetylase 3 isoform X3

    Conserved Domains (1) summary
    cd10005
    Location:1 → 360
    HDAC3; Histone deacetylase 3 (HDAC3)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

    Range
    35730823..35745706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038530443.1 → XP_038386371.1  histone deacetylase 3 isoform X2

    Conserved Domains (1) summary
    cd10005
    Location:5 → 369
    HDAC3; Histone deacetylase 3 (HDAC3)

  2. XM_038530442.1 → XP_038386370.1  histone deacetylase 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LAI3, A0A8C0M140, A0A8I3P468
    Conserved Domains (1) summary
    cd10005
    Location:3 → 383
    HDAC3; Histone deacetylase 3 (HDAC3)

  3. XM_038530444.1 → XP_038386372.1  histone deacetylase 3 isoform X3

    Conserved Domains (1) summary
    cd10005
    Location:1 → 360
    HDAC3; Histone deacetylase 3 (HDAC3)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    33635234..33650086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014107949.3 → XP_013963424.1  histone deacetylase 3 isoform X2

    Conserved Domains (1) summary
    cd10005
    Location:5 → 369
    HDAC3; Histone deacetylase 3 (HDAC3)

  2. XM_535219.6 → XP_535219.2  histone deacetylase 3 isoform X1

    See identical proteins and their annotated locations for XP_535219.2

    UniProtKB/TrEMBL
    A0A8C0LAI3, A0A8C0M140, A0A8I3P468
    Conserved Domains (1) summary
    cd10005
    Location:3 → 383
    HDAC3; Histone deacetylase 3 (HDAC3)

  3. XM_022408761.2 → XP_022264469.1  histone deacetylase 3 isoform X3

    Conserved Domains (1) summary
    cd10005
    Location:1 → 360
    HDAC3; Histone deacetylase 3 (HDAC3)
Nucleotide Protein
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