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SHOC2 SHOC2 leucine rich repeat scaffold protein [ Canis lupus familiaris (dog) ]

Gene ID: 477819, updated on 5-Mar-2024

Summary

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Official Symbol
SHOC2provided by VGNC
Official Full Name
SHOC2 leucine rich repeat scaffold proteinprovided by VGNC
Primary source
VGNC:VGNC:46152
See related
Ensembl:ENSCAFG00845029169
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (22766445..22863097)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (22393960..22490541)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (22466604..22563246)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (22325648..22422221)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (22332434..22429036)

Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene RNA binding motif protein 20 Neighboring gene programmed cell death 4 Neighboring gene BBSome interacting protein 1 Neighboring gene adrenoceptor alpha 2A Neighboring gene uncharacterized LOC111093044

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat protein SHOC-2
Names
soc-2 suppressor of clear homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051832.1 Reference ROS_Cfam_1.0

    Range
    22766445..22863097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038440546.1 → XP_038296474.1  leucine-rich repeat protein SHOC-2

    UniProtKB/TrEMBL
    A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038440545.1 → XP_038296473.1  leucine-rich repeat protein SHOC-2

    UniProtKB/TrEMBL
    A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
    Related
    ENSCAFP00845040506.1, ENSCAFT00845051625.1
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_038440547.1 → XP_038296475.1  leucine-rich repeat protein SHOC-2

    UniProtKB/TrEMBL
    A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049288.1 Alternate UMICH_Zoey_3.1

    Range
    22325648..22422221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038515174.1 → XP_038371102.1  leucine-rich repeat protein SHOC-2

    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038515173.1 → XP_038371101.1  leucine-rich repeat protein SHOC-2

    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_038515175.1 → XP_038371103.1  leucine-rich repeat protein SHOC-2

    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

    Range
    22332434..22429036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038642957.1 → XP_038498885.1  leucine-rich repeat protein SHOC-2

    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038642956.1 → XP_038498884.1  leucine-rich repeat protein SHOC-2

    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_038642958.1 → XP_038498886.1  leucine-rich repeat protein SHOC-2

    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

    Range
    22466604..22563246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038578776.1 → XP_038434704.1  leucine-rich repeat protein SHOC-2

    UniProtKB/TrEMBL
    A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038578775.1 → XP_038434703.1  leucine-rich repeat protein SHOC-2

    UniProtKB/TrEMBL
    A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_038578777.1 → XP_038434705.1  leucine-rich repeat protein SHOC-2

    UniProtKB/TrEMBL
    A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    22393960..22490541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005637720.4 → XP_005637777.1  leucine-rich repeat protein SHOC-2

    See identical proteins and their annotated locations for XP_005637777.1

    UniProtKB/TrEMBL
    A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_535013.7 → XP_535013.2  leucine-rich repeat protein SHOC-2

    See identical proteins and their annotated locations for XP_535013.2

    UniProtKB/TrEMBL
    A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_038460475.1 → XP_038316403.1  leucine-rich repeat protein SHOC-2

    UniProtKB/TrEMBL
    A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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