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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference ROS_Cfam_1.0
Genomic
-
NC_051831.1 Reference ROS_Cfam_1.0
- Range
-
12856273..13206411 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038438503.1 → XP_038294431.1 contactin-1 isoform X1
- UniProtKB/TrEMBL
- A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
- Related
- ENSCAFP00845042676.1, ENSCAFT00845054315.1
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038438505.1 → XP_038294433.1 contactin-1 isoform X1
- UniProtKB/TrEMBL
- A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
- Related
- ENSCAFP00845042723.1, ENSCAFT00845054371.1
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038438504.1 → XP_038294432.1 contactin-1 isoform X1
- UniProtKB/TrEMBL
- A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038438506.1 → XP_038294434.1 contactin-1 isoform X1
- UniProtKB/TrEMBL
- A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038438507.1 → XP_038294435.1 contactin-1 isoform X2
- UniProtKB/TrEMBL
- A0A8C0P6M5, A0A8C0TLI1, A0A8I3Q4B4
- Related
- ENSCAFP00845042729.1, ENSCAFT00845054379.1
- Conserved Domains (6) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 602
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
Alternate UMICH_Zoey_3.1
Genomic
-
NC_049287.1 Alternate UMICH_Zoey_3.1
- Range
-
12671345..12901312 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038513188.1 → XP_038369116.1 LOW QUALITY PROTEIN: contactin-1 isoform X1
Alternate UNSW_CanFamBas_1.0
Genomic
-
NC_049768.1 Alternate UNSW_CanFamBas_1.0
- Range
-
12704418..13054458 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038640965.1 → XP_038496893.1 contactin-1 isoform X1
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038640967.1 → XP_038496895.1 contactin-1 isoform X1
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038640966.1 → XP_038496894.1 contactin-1 isoform X1
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038640968.1 → XP_038496896.1 contactin-1 isoform X1
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038640969.1 → XP_038496897.1 contactin-1 isoform X2
- Conserved Domains (6) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 602
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
Alternate UU_Cfam_GSD_1.0
Genomic
-
NC_049248.1 Alternate UU_Cfam_GSD_1.0
- Range
-
33541381..33890677
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038577318.1 → XP_038433246.1 contactin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8C0THK9
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038577321.1 → XP_038433249.1 contactin-1 isoform X2
- UniProtKB/TrEMBL
-
A0A8C0TLI1
- Conserved Domains (6) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 602
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038577320.1 → XP_038433248.1 contactin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8C0THK9
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038577319.1 → XP_038433247.1 contactin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8C0THK9
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
Alternate Dog10K_Boxer_Tasha Primary Assembly
Genomic
-
NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly
- Range
-
33445834..33709949
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038459975.1 → XP_038315903.1 contactin-1 isoform X1
- UniProtKB/TrEMBL
- A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_038459976.1 → XP_038315904.1 contactin-1 isoform X2
- UniProtKB/TrEMBL
- A0A8C0P6M5, A0A8C0TLI1, A0A8I3Q4B4
- Conserved Domains (6) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 602
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain
-
XM_005636975.4 → XP_005637032.2 contactin-1 isoform X1
- UniProtKB/TrEMBL
- A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
- Conserved Domains (8) summary
-
- cd05851
Location:241 → 328
- IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
- cd00063
Location:610 → 697
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:811 → 893
- fn3; Fibronectin type III domain
- cd00096
Location:42 → 46
- Ig; Ig strand A [structural motif]
- cd04970
Location:503 → 601
- Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
- cd05727
Location:142 → 230
- Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
- cd05852
Location:413 → 501
- Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
- cl11960
Location:40 → 134
- Ig; Immunoglobulin domain