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CNTN1 contactin 1 [ Canis lupus familiaris (dog) ]

Gene ID: 477641, updated on 5-Mar-2024

Summary

Official Symbol
CNTN1provided by VGNC
Official Full Name
contactin 1provided by VGNC
Primary source
VGNC:VGNC:39432
See related
Ensembl:ENSCAFG00845030614
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

Location:
chromosome: 27
Exon count:
28
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (12856273..13206411, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (33445834..33709949)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (33541381..33890677)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (12671345..12901312, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (12704418..13054458, complement)

Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119866400 Neighboring gene uncharacterized LOC119866399 Neighboring gene PDZ domain containing ring finger 4 Neighboring gene elongation factor 1-alpha 1-like Neighboring gene small nucleolar RNA U3 Neighboring gene BH3 interacting domain death agonist pseudogene

Genomic regions, transcripts, and products

Pathways from PubChem

General protein information

Preferred Names
contactin-1; LOW QUALITY PROTEIN: contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051831.1 Reference ROS_Cfam_1.0

    Range
    12856273..13206411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038438503.1XP_038294431.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
    Related
    ENSCAFP00845042676.1, ENSCAFT00845054315.1
    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  2. XM_038438505.1XP_038294433.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
    Related
    ENSCAFP00845042723.1, ENSCAFT00845054371.1
    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  3. XM_038438504.1XP_038294432.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  4. XM_038438506.1XP_038294434.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  5. XM_038438507.1XP_038294435.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0P6M5, A0A8C0TLI1, A0A8I3Q4B4
    Related
    ENSCAFP00845042729.1, ENSCAFT00845054379.1
    Conserved Domains (6) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503602
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049287.1 Alternate UMICH_Zoey_3.1

    Range
    12671345..12901312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038513188.1XP_038369116.1  LOW QUALITY PROTEIN: contactin-1 isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

    Range
    12704418..13054458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038640965.1XP_038496893.1  contactin-1 isoform X1

    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  2. XM_038640967.1XP_038496895.1  contactin-1 isoform X1

    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  3. XM_038640966.1XP_038496894.1  contactin-1 isoform X1

    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  4. XM_038640968.1XP_038496896.1  contactin-1 isoform X1

    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  5. XM_038640969.1XP_038496897.1  contactin-1 isoform X2

    Conserved Domains (6) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503602
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

    Range
    33541381..33890677
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038577318.1XP_038433246.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0THK9
    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  2. XM_038577321.1XP_038433249.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0TLI1
    Conserved Domains (6) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503602
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  3. XM_038577320.1XP_038433248.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0THK9
    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  4. XM_038577319.1XP_038433247.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0THK9
    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    33445834..33709949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038459975.1XP_038315903.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  2. XM_038459976.1XP_038315904.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0P6M5, A0A8C0TLI1, A0A8I3Q4B4
    Conserved Domains (6) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503602
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain
  3. XM_005636975.4XP_005637032.2  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
    Conserved Domains (8) summary
    cd05851
    Location:241328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:610697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811893
    fn3; Fibronectin type III domain
    cd00096
    Location:4246
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:413501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:40134
    Ig; Immunoglobulin domain