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GTF3A general transcription factor IIIA [ Canis lupus familiaris (dog) ]

Gene ID: 477329, updated on 5-Mar-2024

Summary

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Official Symbol
GTF3Aprovided by VGNC
Official Full Name
general transcription factor IIIAprovided by VGNC
Primary source
VGNC:VGNC:58304
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 25
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (12296320..12313569, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (12230324..12247162, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (12227400..12244669, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (12190495..12207308, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (12182512..12199535, complement)

Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L26-like Neighboring gene uncharacterized LOC102153058 Neighboring gene mitochondrial translational initiation factor 3 Neighboring gene uncharacterized LOC119865911 Neighboring gene uncharacterized LOC119865830

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor IIIA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051829.1 Reference ROS_Cfam_1.0

    Range
    12296320..12313569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038434989.1 → XP_038290917.1  transcription factor IIIA isoform X2

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_038434991.1 → XP_038290919.1  transcription factor IIIA isoform X3

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_038434988.1 → XP_038290916.1  transcription factor IIIA isoform X1

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  4. XM_038434987.1 → XP_038290915.1  transcription factor IIIA isoform X1

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049285.1 Alternate UMICH_Zoey_3.1

    Range
    12190495..12207308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038509974.1 → XP_038365902.1  transcription factor IIIA isoform X2

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_038509975.1 → XP_038365903.1  transcription factor IIIA isoform X3

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_038509973.1 → XP_038365901.1  transcription factor IIIA isoform X1

  4. XM_038509972.1 → XP_038365900.1  transcription factor IIIA isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

    Range
    12182512..12199535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038637695.1 → XP_038493623.1  transcription factor IIIA isoform X2

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_038637696.1 → XP_038493624.1  transcription factor IIIA isoform X3

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_038637694.1 → XP_038493622.1  transcription factor IIIA isoform X1

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  4. XM_038637692.1 → XP_038493620.1  transcription factor IIIA isoform X1

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

    Range
    12227400..12244669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038573405.1 → XP_038429333.1  transcription factor IIIA isoform X2

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_038573406.1 → XP_038429334.1  transcription factor IIIA isoform X3

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_038573404.1 → XP_038429332.1  transcription factor IIIA isoform X1

  4. XM_038573403.1 → XP_038429331.1  transcription factor IIIA isoform X1

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    12230324..12247162 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038458796.1 → XP_038314724.1  transcription factor IIIA isoform X2

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_038458797.1 → XP_038314725.1  transcription factor IIIA isoform X3

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_014107407.3 → XP_013962882.1  transcription factor IIIA isoform X1

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type

  4. XM_014107406.2 → XP_013962881.1  transcription factor IIIA isoform X1

    Conserved Domains (2) summary
    sd00017
    Location:31 → 51
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:30 → 51
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
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