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ITGA9 integrin subunit alpha 9 [ Canis lupus familiaris (dog) ]

Gene ID: 477021, updated on 5-Mar-2024

Summary

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Official Symbol
ITGA9provided by VGNC
Official Full Name
integrin subunit alpha 9provided by VGNC
Primary source
VGNC:VGNC:49914
See related
Ensembl:ENSCAFG00845028890
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ITGA9 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
28
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (7570129..7906843)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (7324331..7660290)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (7518368..7854757)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (7385756..7721640)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (7525382..7862375)

Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene golgin A4 Neighboring gene ADP-ribosylation factor-like protein 2 Neighboring gene uncharacterized LOC102151744 Neighboring gene uncharacterized LOC111091868 Neighboring gene uncharacterized LOC111091867 Neighboring gene CTD small phosphatase like Neighboring gene microRNA mir-26a-1 Neighboring gene villin like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051827.1 Reference ROS_Cfam_1.0

    Range
    7570129..7906843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038431857.1 → XP_038287785.1  integrin alpha-9

    UniProtKB/TrEMBL
    A0A8C0JJU1, A0A8I3S700, A0A8P0SAF7
    Related
    ENSCAFP00845040327.1, ENSCAFT00845051403.1
    Conserved Domains (2) summary
    smart00191
    Location:361 → 414
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:459 → 903
    Integrin_alpha2; Integrin alpha

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049283.1 Alternate UMICH_Zoey_3.1

    Range
    7385756..7721640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038507179.1 → XP_038363107.1  integrin alpha-9

    Conserved Domains (2) summary
    smart00191
    Location:361 → 414
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:459 → 903
    Integrin_alpha2; Integrin alpha

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

    Range
    7525382..7862375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038634599.1 → XP_038490527.1  integrin alpha-9

    Conserved Domains (2) summary
    smart00191
    Location:361 → 414
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:459 → 903
    Integrin_alpha2; Integrin alpha

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

    Range
    7518368..7854757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038570409.1 → XP_038426337.1  integrin alpha-9

    UniProtKB/TrEMBL
    A0A8C0JJU1, A0A8I3S700, A0A8P0SAF7
    Conserved Domains (2) summary
    smart00191
    Location:361 → 414
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:459 → 903
    Integrin_alpha2; Integrin alpha

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    7324331..7660290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038457086.1 → XP_038313014.1  integrin alpha-9

    UniProtKB/TrEMBL
    A0A8C0JJU1, A0A8I3S700, A0A8P0SAF7
    Conserved Domains (2) summary
    smart00191
    Location:361 → 414
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:459 → 903
    Integrin_alpha2; Integrin alpha
Nucleotide Protein
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