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POLR2I RNA polymerase II subunit I [ Canis lupus familiaris (dog) ]

Gene ID: 476476, updated on 5-Mar-2024

Summary

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Official Symbol
POLR2Iprovided by VGNC
Official Full Name
RNA polymerase II subunit Iprovided by VGNC
Primary source
VGNC:VGNC:44798
See related
Ensembl:ENSCAFG00845000395
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (117188905..117190522)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (115991516..115993132)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (117431650..117433267)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (116756300..116757917)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (116376467..116378097)

Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene stress-induced-phosphoprotein 1 Neighboring gene putative deoxyribonuclease TATDN1 Neighboring gene tubulin folding cofactor B Neighboring gene ovo like zinc finger 3 Neighboring gene WD repeat domain 62 Neighboring gene uncharacterized LOC119869627 Neighboring gene THAP domain containing 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-coupled nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB9
Names
polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa
XP_038324376.1
XP_038385155.1
XP_038449418.1
XP_038513260.1
XP_853642.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051805.1 Reference ROS_Cfam_1.0

    Range
    117188905..117190522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038657332.1 → XP_038513260.1  DNA-directed RNA polymerase II subunit RPB9

    UniProtKB/TrEMBL
    A0A8C0KVX9, A0A8C0T1X8, A0A8I3MHP5
    Related
    ENSCAFP00845000434.1, ENSCAFT00845000622.1
    Conserved Domains (2) summary
    COG1594
    Location:14 → 125
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10508
    Location:74 → 124
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049261.1 Alternate UMICH_Zoey_3.1

    Range
    116756300..116757917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038468448.1 → XP_038324376.1  DNA-directed RNA polymerase II subunit RPB9

    Conserved Domains (2) summary
    COG1594
    Location:14 → 125
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10508
    Location:74 → 124
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

    Range
    116376467..116378097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038593490.1 → XP_038449418.1  DNA-directed RNA polymerase II subunit RPB9

    Conserved Domains (2) summary
    COG1594
    Location:14 → 125
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10508
    Location:74 → 124
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

    Range
    117431650..117433267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038529227.1 → XP_038385155.1  DNA-directed RNA polymerase II subunit RPB9

    UniProtKB/TrEMBL
    A0A8C0KVX9, A0A8C0T1X8, A0A8I3MHP5
    Conserved Domains (2) summary
    COG1594
    Location:14 → 125
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10508
    Location:74 → 124
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    115991516..115993132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_848549.6 → XP_853642.1  DNA-directed RNA polymerase II subunit RPB9

    See identical proteins and their annotated locations for XP_853642.1

    UniProtKB/TrEMBL
    A0A8C0KVX9, A0A8C0T1X8, A0A8I3MHP5
    Conserved Domains (2) summary
    COG1594
    Location:14 → 125
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10508
    Location:74 → 124
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II
Nucleotide Protein
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