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BSCL2 BSCL2 lipid droplet biogenesis associated, seipin [ Canis lupus familiaris (dog) ]

Gene ID: 476054, updated on 5-Mar-2024

Summary

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Official Symbol
BSCL2provided by VGNC
Official Full Name
BSCL2 lipid droplet biogenesis associated, seipinprovided by VGNC
Primary source
VGNC:VGNC:38538
See related
Ensembl:ENSCAFG00845008494
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (55010452..55023323)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (52563744..52576469)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (54477585..54490344)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (54106793..54119570)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (53681289..53694035)

Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 9C Neighboring gene heterogeneous nuclear ribonucleoprotein U like 2 Neighboring gene G protein subunit gamma 3 Neighboring gene LRRN4 C-terminal like Neighboring gene UBX domain protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in lipid droplet organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid storage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
seipin
Names
BSCL2, seipin lipid droplet biogenesis associated
Bernardinelli-Seip congenital lipodystrophy 2 (seipin)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051822.1 Reference ROS_Cfam_1.0

    Range
    55010452..55023323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038425299.1 → XP_038281227.1  seipin isoform X5

    UniProtKB/TrEMBL
    A0A8C0KJM7, A0A8C0RDX1, A0A8I3N5X2, A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  2. XM_038425304.1 → XP_038281232.1  seipin isoform X9

    Conserved Domains (2) summary
    PHA03169
    Location:326 → 418
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:133 → 278
    Seipin; Putative adipose-regulatory protein (Seipin)

  3. XM_038425301.1 → XP_038281229.1  seipin isoform X6

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 443
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  4. XM_038425298.1 → XP_038281226.1  seipin isoform X5

    UniProtKB/TrEMBL
    A0A8C0KJM7, A0A8C0RDX1, A0A8I3N5X2, A0A8I3RUM6, A0A8P0P543
    Related
    ENSCAFP00845011588.1, ENSCAFT00845014948.1
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  5. XM_038425300.1 → XP_038281228.1  seipin isoform X5

    UniProtKB/TrEMBL
    A0A8C0KJM7, A0A8C0RDX1, A0A8I3N5X2, A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  6. XM_038425294.1 → XP_038281222.1  seipin isoform X1

    Conserved Domains (2) summary
    PHA03169
    Location:416 → 508
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:223 → 368
    Seipin; Putative adipose-regulatory protein (Seipin)

  7. XM_038425295.1 → XP_038281223.1  seipin isoform X2

    Conserved Domains (2) summary
    PHA03169
    Location:416 → 506
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:223 → 368
    Seipin; Putative adipose-regulatory protein (Seipin)

  8. XM_038425302.1 → XP_038281230.1  seipin isoform X7

    Conserved Domains (2) summary
    PHA03169
    Location:336 → 428
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:223 → 318
    Seipin; Putative adipose-regulatory protein (Seipin)

  9. XM_038425303.1 → XP_038281231.1  seipin isoform X8

    Conserved Domains (2) summary
    pfam06775
    Location:223 → 318
    Seipin; Putative adipose-regulatory protein (Seipin)
    NF033913
    Location:308 → 429
    fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA

  10. XM_038425305.1 → XP_038281233.1  seipin isoform X10

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:291 → 383
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:39 → 243
    Seipin; Putative adipose-regulatory protein (Seipin)

  11. XM_038425296.1 → XP_038281224.1  seipin isoform X3

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:363 → 455
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:111 → 315
    Seipin; Putative adipose-regulatory protein (Seipin)

  12. XM_038425297.1 → XP_038281225.1  seipin isoform X4

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:363 → 453
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:111 → 315
    Seipin; Putative adipose-regulatory protein (Seipin)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049278.1 Alternate UMICH_Zoey_3.1

    Range
    54106793..54119570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038501568.1 → XP_038357496.1  seipin isoform X5

    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  2. XM_038501573.1 → XP_038357501.1  seipin isoform X9

  3. XM_038501570.1 → XP_038357498.1  seipin isoform X6

    Conserved Domains (2) summary
    PHA03169
    Location:353 → 443
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  4. XM_038501567.1 → XP_038357495.1  seipin isoform X5

    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  5. XM_038501569.1 → XP_038357497.1  seipin isoform X5

    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  6. XM_038501563.1 → XP_038357491.1  seipin isoform X1

    Conserved Domains (2) summary
    PHA03169
    Location:415 → 507
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:222 → 367
    Seipin; Putative adipose-regulatory protein (Seipin)

  7. XM_038501564.1 → XP_038357492.1  seipin isoform X2

    Conserved Domains (2) summary
    PHA03169
    Location:415 → 505
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:222 → 367
    Seipin; Putative adipose-regulatory protein (Seipin)

  8. XM_038501571.1 → XP_038357499.1  seipin isoform X7

    Conserved Domains (2) summary
    PHA03169
    Location:335 → 427
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:222 → 317
    Seipin; Putative adipose-regulatory protein (Seipin)

  9. XM_038501572.1 → XP_038357500.1  seipin isoform X8

    Conserved Domains (2) summary
    pfam06775
    Location:222 → 317
    Seipin; Putative adipose-regulatory protein (Seipin)
    NF033913
    Location:307 → 428
    fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA

  10. XM_038501574.1 → XP_038357502.1  seipin isoform X10

    Conserved Domains (2) summary
    PHA03169
    Location:291 → 383
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:39 → 243
    Seipin; Putative adipose-regulatory protein (Seipin)

  11. XM_038501565.1 → XP_038357493.1  seipin isoform X3

    Conserved Domains (2) summary
    PHA03169
    Location:363 → 455
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:111 → 315
    Seipin; Putative adipose-regulatory protein (Seipin)

  12. XM_038501566.1 → XP_038357494.1  seipin isoform X4

    Conserved Domains (2) summary
    PHA03169
    Location:363 → 453
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:111 → 315
    Seipin; Putative adipose-regulatory protein (Seipin)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

    Range
    53681289..53694035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038628394.1 → XP_038484322.1  seipin isoform X5

    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  2. XM_038628399.1 → XP_038484327.1  seipin isoform X9

    Conserved Domains (2) summary
    PHA03169
    Location:326 → 418
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:133 → 278
    Seipin; Putative adipose-regulatory protein (Seipin)

  3. XM_038628396.1 → XP_038484324.1  seipin isoform X6

    Conserved Domains (2) summary
    PHA03169
    Location:353 → 443
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  4. XM_038628393.1 → XP_038484321.1  seipin isoform X5

    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  5. XM_038628395.1 → XP_038484323.1  seipin isoform X5

    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  6. XM_038628389.1 → XP_038484317.1  seipin isoform X1

  7. XM_038628390.1 → XP_038484318.1  seipin isoform X2

  8. XM_038628397.1 → XP_038484325.1  seipin isoform X7

  9. XM_038628398.1 → XP_038484326.1  seipin isoform X8

  10. XM_038628400.1 → XP_038484328.1  seipin isoform X10

    Conserved Domains (2) summary
    PHA03169
    Location:291 → 383
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:39 → 243
    Seipin; Putative adipose-regulatory protein (Seipin)

  11. XM_038628391.1 → XP_038484319.1  seipin isoform X3

    Conserved Domains (2) summary
    PHA03169
    Location:363 → 455
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:111 → 315
    Seipin; Putative adipose-regulatory protein (Seipin)

  12. XM_038628392.1 → XP_038484320.1  seipin isoform X4

    Conserved Domains (2) summary
    PHA03169
    Location:363 → 453
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:111 → 315
    Seipin; Putative adipose-regulatory protein (Seipin)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

    Range
    54477585..54490344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038564254.1 → XP_038420182.1  seipin isoform X5

    UniProtKB/TrEMBL
    A0A8C0KJM7, A0A8C0RDX1, A0A8I3N5X2, A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  2. XM_038564260.1 → XP_038420188.1  seipin isoform X9

    Conserved Domains (2) summary
    PHA03169
    Location:326 → 418
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:133 → 278
    Seipin; Putative adipose-regulatory protein (Seipin)

  3. XM_038564256.1 → XP_038420184.1  seipin isoform X6

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 443
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  4. XM_038564253.1 → XP_038420181.1  seipin isoform X5

    UniProtKB/TrEMBL
    A0A8C0KJM7, A0A8C0RDX1, A0A8I3N5X2, A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  5. XM_038564255.1 → XP_038420183.1  seipin isoform X5

    UniProtKB/TrEMBL
    A0A8C0KJM7, A0A8C0RDX1, A0A8I3N5X2, A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  6. XM_038564249.1 → XP_038420177.1  seipin isoform X1

  7. XM_038564250.1 → XP_038420178.1  seipin isoform X2

  8. XM_038564257.1 → XP_038420185.1  seipin isoform X7

  9. XM_038564258.1 → XP_038420186.1  seipin isoform X8

  10. XM_038564261.1 → XP_038420189.1  seipin isoform X10

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:291 → 383
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:39 → 243
    Seipin; Putative adipose-regulatory protein (Seipin)

  11. XM_038564251.1 → XP_038420179.1  seipin isoform X3

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:363 → 455
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:111 → 315
    Seipin; Putative adipose-regulatory protein (Seipin)

  12. XM_038564252.1 → XP_038420180.1  seipin isoform X4

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:363 → 453
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:111 → 315
    Seipin; Putative adipose-regulatory protein (Seipin)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    52563744..52576469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022405786.2 → XP_022261494.1  seipin isoform X5

    UniProtKB/TrEMBL
    A0A8C0KJM7, A0A8C0RDX1, A0A8I3N5X2, A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  2. XM_014121231.3 → XP_013976706.1  seipin isoform X9

    Conserved Domains (2) summary
    pfam05831
    Location:310 → 411
    GAGE; GAGE protein
    pfam06775
    Location:135 → 277
    Seipin; Putative adipose-regulatory protein (Seipin)

  3. XM_014121228.3 → XP_013976703.1  seipin isoform X6

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 443
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  4. XM_005631612.4 → XP_005631669.1  seipin isoform X5

    UniProtKB/TrEMBL
    A0A8C0KJM7, A0A8C0RDX1, A0A8I3N5X2, A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  5. XM_038453843.1 → XP_038309771.1  seipin isoform X5

    UniProtKB/TrEMBL
    A0A8C0KJM7, A0A8C0RDX1, A0A8I3N5X2, A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:353 → 445
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:101 → 305
    Seipin; Putative adipose-regulatory protein (Seipin)

  6. XM_038453841.1 → XP_038309769.1  seipin isoform X1

    Conserved Domains (2) summary
    PHA03169
    Location:415 → 507
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:222 → 367
    Seipin; Putative adipose-regulatory protein (Seipin)

  7. XM_038453842.1 → XP_038309770.1  seipin isoform X2

    Conserved Domains (2) summary
    PHA03169
    Location:415 → 505
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:222 → 367
    Seipin; Putative adipose-regulatory protein (Seipin)

  8. XM_038453844.1 → XP_038309772.1  seipin isoform X7

    Conserved Domains (2) summary
    PHA03169
    Location:335 → 427
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:222 → 317
    Seipin; Putative adipose-regulatory protein (Seipin)

  9. XM_038453845.1 → XP_038309773.1  seipin isoform X8

    Conserved Domains (2) summary
    pfam06775
    Location:222 → 317
    Seipin; Putative adipose-regulatory protein (Seipin)
    NF033913
    Location:307 → 428
    fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA

  10. XM_022405787.2 → XP_022261495.1  seipin isoform X10

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:291 → 383
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:39 → 243
    Seipin; Putative adipose-regulatory protein (Seipin)

  11. XM_014121233.3 → XP_013976708.2  seipin isoform X3

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:363 → 455
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:111 → 315
    Seipin; Putative adipose-regulatory protein (Seipin)

  12. XM_022405785.2 → XP_022261493.1  seipin isoform X4

    UniProtKB/TrEMBL
    A0A8I3RUM6, A0A8P0P543
    Conserved Domains (2) summary
    PHA03169
    Location:363 → 453
    PHA03169; hypothetical protein; Provisional
    pfam06775
    Location:111 → 315
    Seipin; Putative adipose-regulatory protein (Seipin)
Nucleotide Protein
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