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POLR1A RNA polymerase I subunit A [ Canis lupus familiaris (dog) ]

Gene ID: 475766, updated on 5-Mar-2024

Summary

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Official Symbol
POLR1Aprovided by VGNC
Official Full Name
RNA polymerase I subunit Aprovided by VGNC
Primary source
VGNC:VGNC:44788
See related
Ensembl:ENSCAFG00845013628
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
35
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (39722717..39805020)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (38675191..38756338)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (39313308..39394902)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (38891244..38972175)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (38927011..39009075)

Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene inner membrane mitochondrial protein Neighboring gene small nucleolar RNA SNORD94 Neighboring gene pentatricopeptide repeat domain 3 Neighboring gene histone H3.v1-like Neighboring gene uncharacterized LOC102156388 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit RPA1
Names
polymerase (RNA) I polypeptide A, 194kDa
XP_038308997.1
XP_038354876.1
XP_038354877.1
XP_038417462.1
XP_038417463.1
XP_038481505.1
XP_038481506.1
XP_038547427.1
XP_038547428.1
XP_532976.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051821.1 Reference ROS_Cfam_1.0

    Range
    39722717..39805020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038691500.1 → XP_038547428.1  DNA-directed RNA polymerase I subunit RPA1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTK8
    Conserved Domains (2) summary
    cd01435
    Location:166 → 896
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:850 → 1559
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5

  2. XM_038691499.1 → XP_038547427.1  DNA-directed RNA polymerase I subunit RPA1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KTK8, A0A8C0Z124, A0A8I3NGT8
    Related
    ENSCAFP00845019163.1, ENSCAFT00845024381.1
    Conserved Domains (2) summary
    cd01435
    Location:16 → 1004
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:958 → 1667
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049277.1 Alternate UMICH_Zoey_3.1

    Range
    38891244..38972175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038498949.1 → XP_038354877.1  DNA-directed RNA polymerase I subunit RPA1 isoform X2

    Conserved Domains (2) summary
    cd01435
    Location:166 → 896
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:850 → 1559
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5

  2. XM_038498948.1 → XP_038354876.1  DNA-directed RNA polymerase I subunit RPA1 isoform X1

    Conserved Domains (2) summary
    cd01435
    Location:16 → 1004
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:958 → 1667
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

    Range
    38927011..39009075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038625578.1 → XP_038481506.1  DNA-directed RNA polymerase I subunit RPA1 isoform X2

  2. XM_038625577.1 → XP_038481505.1  DNA-directed RNA polymerase I subunit RPA1 isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

    Range
    39313308..39394902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038561535.1 → XP_038417463.1  DNA-directed RNA polymerase I subunit RPA1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTK8
    Conserved Domains (2) summary
    cd01435
    Location:166 → 896
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:850 → 1559
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5

  2. XM_038561534.1 → XP_038417462.1  DNA-directed RNA polymerase I subunit RPA1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KTK8, A0A8C0Z124, A0A8I3NGT8
    Conserved Domains (2) summary
    cd01435
    Location:16 → 1004
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:958 → 1667
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    38675191..38756338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038453069.1 → XP_038308997.1  DNA-directed RNA polymerase I subunit RPA1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTK8
    Conserved Domains (2) summary
    cd01435
    Location:166 → 896
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:850 → 1559
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5

  2. XM_532976.6 → XP_532976.3  DNA-directed RNA polymerase I subunit RPA1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KTK8, A0A8C0Z124, A0A8I3NGT8
    Conserved Domains (2) summary
    cd01435
    Location:16 → 1004
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:958 → 1667
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5
Nucleotide Protein
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