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AHR aryl hydrocarbon receptor [ Canis lupus familiaris (dog) ]

Gene ID: 475251, updated on 5-Mar-2024

Summary

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Official Symbol
AHRprovided by VGNC
Official Full Name
aryl hydrocarbon receptorprovided by VGNC
Primary source
VGNC:VGNC:54752
See related
Ensembl:ENSCAFG00845005867
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (31661762..31711544)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (31264779..31314544)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (31792396..31842188)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (31766284..31816050)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (31476179..31525758)

Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene aldose reductase pseudogene Neighboring gene uncharacterized LOC119867207 Neighboring gene uncharacterized LOC102153624 Neighboring gene uncharacterized LOC111098779

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification and analysis of basic helix-loop-helix domains in dog, Canis lupus familiaris. Wang XH, et al. Mol Genet Genomics, 2015 Apr. PMID 25403511

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aryl hydrocarbon receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051818.1 Reference ROS_Cfam_1.0

    Range
    31661762..31711544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038686645.1 → XP_038542573.1  aryl hydrocarbon receptor

    UniProtKB/TrEMBL
    A0A8C0TAY9, A0A8I3RSX6, A0A8P0P205
    Related
    ENSCAFP00845008074.1, ENSCAFT00845010390.1
    Conserved Domains (3) summary
    pfam08447
    Location:299 → 381
    PAS_3; PAS fold
    cd11436
    Location:28 → 88
    bHLH-PAS_AhR; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor (AhR) and similar proteins
    pfam00989
    Location:112 → 225
    PAS; PAS fold

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049274.1 Alternate UMICH_Zoey_3.1

    Range
    31766284..31816050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038494734.1 → XP_038350662.1  aryl hydrocarbon receptor

    Conserved Domains (3) summary
    pfam08447
    Location:299 → 381
    PAS_3; PAS fold
    cd11436
    Location:28 → 88
    bHLH-PAS_AhR; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor (AhR) and similar proteins
    pfam00989
    Location:112 → 225
    PAS; PAS fold

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

    Range
    31476179..31525758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038620952.1 → XP_038476880.1  aryl hydrocarbon receptor

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

    Range
    31792396..31842188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038557017.1 → XP_038412945.1  aryl hydrocarbon receptor

    UniProtKB/TrEMBL
    A0A8C0TAY9, A0A8I3RSX6, A0A8P0P205
    Conserved Domains (3) summary
    pfam08447
    Location:299 → 381
    PAS_3; PAS fold
    cd11436
    Location:28 → 88
    bHLH-PAS_AhR; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor (AhR) and similar proteins
    pfam00989
    Location:112 → 225
    PAS; PAS fold

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    31264779..31314544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_532485.7 → XP_532485.2  aryl hydrocarbon receptor

    UniProtKB/TrEMBL
    A0A8C0TAY9, A0A8I3RSX6, A0A8P0P205
    Conserved Domains (3) summary
    pfam08447
    Location:299 → 381
    PAS_3; PAS fold
    cd11436
    Location:28 → 88
    bHLH-PAS_AhR; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor (AhR) and similar proteins
    pfam00989
    Location:112 → 225
    PAS; PAS fold
Nucleotide Protein
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