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POLR2B RNA polymerase II subunit B [ Canis lupus familiaris (dog) ]

Gene ID: 475152, updated on 5-Mar-2024

Summary

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Official Symbol
POLR2Bprovided by VGNC
Official Full Name
RNA polymerase II subunit Bprovided by VGNC
Primary source
VGNC:VGNC:44793
See related
Ensembl:ENSCAFG00845014082
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
25
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 13 NC_051817.1 (49705912..49752974)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 13 NC_006595.4 (48982054..49028661)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 13 NC_049234.1 (49852758..49900240)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 13 NC_049273.1 (49378679..49425490)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 13 NC_049754.1 (48907935..48954761)

Chromosome 13 - NC_051817.1Genomic Context describing neighboring genes Neighboring gene U5 spliceosomal RNA Neighboring gene RE1 silencing transcription factor Neighboring gene nitric oxide associated 1 Neighboring gene U4 spliceosomal RNA Neighboring gene insulin like growth factor binding protein 7 Neighboring gene uncharacterized LOC106559646 Neighboring gene SUMO-activating enzyme subunit 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonucleoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB2; LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2
Names
polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
XP_013974298.1
XP_038349809.1
XP_038412115.1
XP_038476047.1
XP_038541665.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051817.1 Reference ROS_Cfam_1.0

    Range
    49705912..49752974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038685737.1 → XP_038541665.1  DNA-directed RNA polymerase II subunit RPB2

    UniProtKB/TrEMBL
    A0A8C0LYL6, A0A8C0PDV4, A0A8I3S0M4, A0A8P0N5D8
    Related
    ENSCAFP00845019891.1, ENSCAFT00845025283.1
    Conserved Domains (1) summary
    PRK08565
    Location:27 → 1172
    PRK08565; DNA-directed RNA polymerase subunit B; Provisional

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049273.1 Alternate UMICH_Zoey_3.1

    Range
    49378679..49425490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038493881.1 → XP_038349809.1  LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049754.1 Alternate UNSW_CanFamBas_1.0

    Range
    48907935..48954761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038620119.1 → XP_038476047.1  DNA-directed RNA polymerase II subunit RPB2

    Conserved Domains (1) summary
    PRK08565
    Location:27 → 1172
    PRK08565; DNA-directed RNA polymerase subunit B; Provisional

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049234.1 Alternate UU_Cfam_GSD_1.0

    Range
    49852758..49900240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038556187.1 → XP_038412115.1  DNA-directed RNA polymerase II subunit RPB2

    UniProtKB/TrEMBL
    A0A8C0LYL6, A0A8C0PDV4, A0A8I3S0M4, A0A8P0N5D8
    Conserved Domains (1) summary
    PRK08565
    Location:27 → 1172
    PRK08565; DNA-directed RNA polymerase subunit B; Provisional

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006595.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    48982054..49028661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014118823.3 → XP_013974298.1  DNA-directed RNA polymerase II subunit RPB2

    UniProtKB/TrEMBL
    A0A8C0LYL6, A0A8C0PDV4, A0A8I3S0M4, A0A8P0N5D8
    Conserved Domains (1) summary
    PRK08565
    Location:27 → 1172
    PRK08565; DNA-directed RNA polymerase subunit B; Provisional
Nucleotide Protein
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