CCN3 cellular communication network factor 3 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: CCN3provided by VGNC
Official Full Name: cellular communication network factor 3provided by VGNC
Primary source: VGNC:VGNC:56074
See related: Ensembl:ENSCAFG00845005703
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as: NOV
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	13	NC_051817.1 (18834948..18843041)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	13	NC_006595.4 (18513047..18521248)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	13	NC_049234.1 (18892544..18900635)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	13	NC_049273.1 (18562694..18570869)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	13	NC_049754.1 (18661289..18669494)

Chromosome 13 - NC_051817.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables heparin binding	IEA Inferred from Electronic Annotation more info	PubMed
enables integrin binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cell adhesion	IEA Inferred from Electronic Annotation more info	PubMed
involved_in signal transduction	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular matrix	IEA Inferred from Electronic Annotation more info	PubMed
located_in extracellular region	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: CCN family member 3

Names: nephroblastoma overexpressed

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051817.1 Reference ROS_Cfam_1.0

Range

18834948..18843041

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038684905.1 → XP_038540833.1 CCN family member 3

UniProtKB/TrEMBL

A0A8C0JV48, A0A8C0RCV6, A0A8I3MYU5, A0A8I3N0U3, A0A8P0SUH1

Related

ENSCAFP00845007895.1, ENSCAFT00845010130.1

Conserved Domains (4) summary

smart00121
Location:29 → 99

IB; Insulin growth factor-binding protein homologues

smart00041
Location:265 → 334

CT; C-terminal cystine knot-like domain (CTCK)

pfam00093
Location:106 → 165

VWC; von Willebrand factor type C domain

pfam19035
Location:202 → 245

TSP1_CCN; CCN3 Nov like TSP1 domain

Alternate UMICH_Zoey_3.1

Genomic

NC_049273.1 Alternate UMICH_Zoey_3.1

Range

18562694..18570869

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038493123.1 → XP_038349051.1 CCN family member 3

Conserved Domains (4) summary

smart00121
Location:29 → 99

IB; Insulin growth factor-binding protein homologues

smart00041
Location:265 → 334

CT; C-terminal cystine knot-like domain (CTCK)

pfam00093
Location:106 → 165

VWC; von Willebrand factor type C domain

pfam19035
Location:202 → 245

TSP1_CCN; CCN3 Nov like TSP1 domain

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049754.1 Alternate UNSW_CanFamBas_1.0

Range

18661289..18669494

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038619291.1 → XP_038475219.1 CCN family member 3

Conserved Domains (4) summary

smart00121
Location:29 → 99

IB; Insulin growth factor-binding protein homologues

smart00041
Location:265 → 334

CT; C-terminal cystine knot-like domain (CTCK)

pfam00093
Location:106 → 165

VWC; von Willebrand factor type C domain

pfam19035
Location:202 → 245

TSP1_CCN; CCN3 Nov like TSP1 domain

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049234.1 Alternate UU_Cfam_GSD_1.0

Range

18892544..18900635

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038555394.1 → XP_038411322.1 CCN family member 3

UniProtKB/TrEMBL

A0A8C0JV48, A0A8C0RCV6, A0A8I3MYU5, A0A8I3N0U3, A0A8P0SUH1

Conserved Domains (4) summary

smart00121
Location:29 → 99

IB; Insulin growth factor-binding protein homologues

smart00041
Location:265 → 334

CT; C-terminal cystine knot-like domain (CTCK)

pfam00093
Location:106 → 165

VWC; von Willebrand factor type C domain

pfam19035
Location:202 → 245

TSP1_CCN; CCN3 Nov like TSP1 domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006595.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

18513047..18521248

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_532317.5 → XP_532317.3 CCN family member 3

UniProtKB/TrEMBL

A0A8C0JV48, A0A8C0RCV6, A0A8I3MYU5, A0A8I3N0U3, A0A8P0SUH1

Conserved Domains (4) summary

smart00121
Location:29 → 99

IB; Insulin growth factor-binding protein homologues

smart00041
Location:265 → 334

CT; C-terminal cystine knot-like domain (CTCK)

pfam00093
Location:106 → 165

VWC; von Willebrand factor type C domain

pfam19035
Location:202 → 245

TSP1_CCN; CCN3 Nov like TSP1 domain