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POLR1E RNA polymerase I subunit E [ Canis lupus familiaris (dog) ]

Gene ID: 474767, updated on 5-Mar-2024

Summary

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Official Symbol
POLR1Eprovided by VGNC
Official Full Name
RNA polymerase I subunit Eprovided by VGNC
Primary source
VGNC:VGNC:44791
See related
Ensembl:ENSCAFG00845013690
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (54903067..54918446)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (52383591..52398993)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (54126950..54142325)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (53401261..53416637)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (53430505..53445895)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene glyoxylate and hydroxypyruvate reductase Neighboring gene uncharacterized LOC102155816 Neighboring gene zinc finger and BTB domain containing 5 Neighboring gene uncharacterized LOC119873948 Neighboring gene F-box protein 10 Neighboring gene uncharacterized LOC119873949

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA polymerase I preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleolar large rRNA transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit RPA49
Names
polymerase (RNA) I polypeptide E, 53kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    54903067..54918446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682184.1 → XP_038538112.1  DNA-directed RNA polymerase I subunit RPA49

    UniProtKB/TrEMBL
    A0A8C0KZK5, A0A8C0STS8, A0A8I3S0B1
    Related
    ENSCAFP00845019216.1, ENSCAFT00845024440.1
    Conserved Domains (1) summary
    pfam06870
    Location:36 → 417
    RNA_pol_I_A49; A49-like RNA polymerase I associated factor

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    53401261..53416637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038490720.1 → XP_038346648.1  DNA-directed RNA polymerase I subunit RPA49

    Conserved Domains (1) summary
    pfam06870
    Location:36 → 417
    RNA_pol_I_A49; A49-like RNA polymerase I associated factor

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    53430505..53445895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038616714.1 → XP_038472642.1  DNA-directed RNA polymerase I subunit RPA49

    Conserved Domains (1) summary
    pfam06870
    Location:36 → 417
    RNA_pol_I_A49; A49-like RNA polymerase I associated factor

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    54126950..54142325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038552853.1 → XP_038408781.1  DNA-directed RNA polymerase I subunit RPA49

    UniProtKB/TrEMBL
    A0A8C0KZK5, A0A8C0STS8, A0A8I3S0B1
    Conserved Domains (1) summary
    pfam06870
    Location:36 → 417
    RNA_pol_I_A49; A49-like RNA polymerase I associated factor

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    52383591..52398993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_531998.6 → XP_531998.2  DNA-directed RNA polymerase I subunit RPA49

    UniProtKB/TrEMBL
    A0A8C0MLU4, A0A8P0S866
    Conserved Domains (1) summary
    pfam06870
    Location:36 → 417
    RNA_pol_I_A49; A49-like RNA polymerase I associated factor
Nucleotide Protein
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