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LMNB1 lamin B1 [ Canis lupus familiaris (dog) ]

Gene ID: 474663, updated on 5-Mar-2024

Summary

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Official Symbol
LMNB1provided by VGNC
Official Full Name
lamin B1provided by VGNC
Primary source
VGNC:VGNC:42718
See related
Ensembl:ENSCAFG00845010706
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (16721688..16778072)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (14788442..14844580)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (15895575..15951943)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (15451725..15508065)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (15298132..15354432)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene sperm microtubule inner protein 10 Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene EP300-interacting inhibitor of differentiation 1-like Neighboring gene 60S ribosomal protein L39-like Neighboring gene uncharacterized LOC119873879 Neighboring gene membrane associated ring-CH-type finger 3 Neighboring gene uncharacterized LOC111098008

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

General protein information

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Preferred Names
lamin-B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    16721688..16778072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038681375.1 → XP_038537303.1  lamin-B1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0PB08, A0A8C0PIY3, A0A8I3NBF9
    Related
    ENSCAFP00845014743.1, ENSCAFT00845018874.1
    Conserved Domains (2) summary
    pfam00038
    Location:31 → 387
    Filament; Intermediate filament protein
    pfam00932
    Location:439 → 542
    LTD; Lamin Tail Domain

  2. XM_038681377.1 → XP_038537305.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

  3. XM_038681378.1 → XP_038537306.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

  4. XM_038681376.1 → XP_038537304.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    15451725..15508065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038489949.1 → XP_038345877.1  lamin-B1 isoform X1

    Conserved Domains (2) summary
    pfam00038
    Location:31 → 387
    Filament; Intermediate filament protein
    pfam00932
    Location:439 → 542
    LTD; Lamin Tail Domain

  2. XM_038489951.1 → XP_038345879.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

  3. XM_038489952.1 → XP_038345880.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

  4. XM_038489950.1 → XP_038345878.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    15298132..15354432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038615878.1 → XP_038471806.1  lamin-B1 isoform X1

    Conserved Domains (2) summary
    pfam00038
    Location:31 → 387
    Filament; Intermediate filament protein
    pfam00932
    Location:439 → 542
    LTD; Lamin Tail Domain

  2. XM_038615880.1 → XP_038471808.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

  3. XM_038615881.1 → XP_038471809.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

  4. XM_038615879.1 → XP_038471807.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    15895575..15951943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038552012.1 → XP_038407940.1  lamin-B1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0PB08, A0A8C0PIY3, A0A8I3NBF9
    Conserved Domains (2) summary
    pfam00038
    Location:31 → 387
    Filament; Intermediate filament protein
    pfam00932
    Location:439 → 542
    LTD; Lamin Tail Domain

  2. XM_038552014.1 → XP_038407942.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

  3. XM_038552015.1 → XP_038407943.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

  4. XM_038552013.1 → XP_038407941.1  lamin-B1 isoform X2

    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    14788442..14844580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_531892.5 → XP_531892.4  lamin-B1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0PB08, A0A8C0PIY3, A0A8I3NBF9
    Conserved Domains (2) summary
    pfam00038
    Location:31 → 387
    Filament; Intermediate filament protein
    pfam00932
    Location:439 → 542
    LTD; Lamin Tail Domain

  2. XM_005626471.4 → XP_005626528.1  lamin-B1 isoform X2

    See identical proteins and their annotated locations for XP_005626528.1

    UniProtKB/TrEMBL
    F1PBK4
    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

  3. XM_005626470.2 → XP_005626527.1  lamin-B1 isoform X2

    See identical proteins and their annotated locations for XP_005626527.1

    UniProtKB/TrEMBL
    F1PBK4
    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain

  4. XM_005626472.4 → XP_005626529.1  lamin-B1 isoform X2

    See identical proteins and their annotated locations for XP_005626529.1

    UniProtKB/TrEMBL
    F1PBK4
    Conserved Domains (2) summary
    pfam00038
    Location:6 → 255
    Filament; Intermediate filament protein
    pfam00932
    Location:307 → 410
    LTD; Lamin Tail Domain
Nucleotide Protein
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