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POLR2F RNA polymerase II, I and III subunit F [ Canis lupus familiaris (dog) ]

Gene ID: 474512, updated on 5-Mar-2024

Summary

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Official Symbol
POLR2Fprovided by VGNC
Official Full Name
RNA polymerase II, I and III subunit Fprovided by VGNC
Primary source
VGNC:VGNC:44797
See related
Ensembl:ENSCAFG00845005328
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (27486614..27499265, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (26649845..26662477, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (27695350..27707999, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (27206582..27218897, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (27518146..27530610, complement)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111097653 Neighboring gene SRY-box transcription factor 10 Neighboring gene chromosome 10 C22orf23 homolog Neighboring gene MICAL like 1 Neighboring gene eukaryotic translation initiation factor 3 subunit L

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerases I, II, and III subunit RPABC2
Names
RNA polymerase II subunit F
polymerase (RNA) II (DNA directed) polypeptide F
XP_038344597.1
XP_038344598.1
XP_038406553.1
XP_038406554.1
XP_038470490.1
XP_038470491.1
XP_038495952.1
XP_038535847.1
XP_038535848.1
XP_038535849.1
XP_531740.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    27486614..27499265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038679919.1 → XP_038535847.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1

    Conserved Domains (1) summary
    PLN00152
    Location:70 → 167
    PLN00152; DNA-directed RNA polymerase; Provisional

  2. XM_038679921.1 → XP_038535849.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0N6F8, A0A8C0N6H6, A0A8I3MQQ2, A0A8I3MWQ0
    Related
    ENSCAFP00845007442.1, ENSCAFT00845009520.1
    Conserved Domains (1) summary
    PLN00152
    Location:26 → 127
    PLN00152; DNA-directed RNA polymerase; Provisional

  3. XM_038679920.1 → XP_038535848.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X3

    Conserved Domains (1) summary
    cl14651
    Location:84 → 139
    RNA_pol_Rpb6; RNA polymerase Rpb6

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    27206582..27218897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038488669.1 → XP_038344597.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X2

    Conserved Domains (1) summary
    PLN00152
    Location:26 → 127
    PLN00152; DNA-directed RNA polymerase; Provisional

  2. XM_038488670.1 → XP_038344598.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X4

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    27518146..27530610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038614562.1 → XP_038470490.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1

    Conserved Domains (1) summary
    PLN00152
    Location:70 → 167
    PLN00152; DNA-directed RNA polymerase; Provisional

  2. XM_038614563.1 → XP_038470491.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X2

    Conserved Domains (1) summary
    PLN00152
    Location:26 → 127
    PLN00152; DNA-directed RNA polymerase; Provisional

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    27695350..27707999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038550625.1 → XP_038406553.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1

    Conserved Domains (1) summary
    PLN00152
    Location:70 → 167
    PLN00152; DNA-directed RNA polymerase; Provisional

  2. XM_038550626.1 → XP_038406554.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0N6F8, A0A8C0N6H6, A0A8I3MQQ2, A0A8I3MWQ0
    Conserved Domains (1) summary
    PLN00152
    Location:26 → 127
    PLN00152; DNA-directed RNA polymerase; Provisional

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    26649845..26662477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038640024.1 → XP_038495952.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1

    Conserved Domains (1) summary
    PLN00152
    Location:70 → 167
    PLN00152; DNA-directed RNA polymerase; Provisional

  2. XM_531740.7 → XP_531740.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X2

    See identical proteins and their annotated locations for XP_531740.1

    UniProtKB/TrEMBL
    A0A8C0N6F8, A0A8C0N6H6, A0A8I3MQQ2, A0A8I3MWQ0
    Conserved Domains (1) summary
    PLN00152
    Location:26 → 127
    PLN00152; DNA-directed RNA polymerase; Provisional
Nucleotide Protein
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