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CD40LG CD40 ligand [ Pan troglodytes (chimpanzee) ]

Gene ID: 473802, updated on 29-Mar-2024

Summary

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Official Symbol
CD40LGprovided by VGNC
Official Full Name
CD40 ligandprovided by VGNC
Primary source
VGNC:VGNC:12233
Locus tag
CK820_G0045672
See related
Ensembl:ENSPTRG00000022318
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
CD154
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) X NC_072421.2 (134086931..134098556)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) X NC_072421.1 (134082997..134094622)

Chromosome X - NC_072421.2Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC738229 Neighboring gene Rac/Cdc42 guanine nucleotide exchange factor 6 Neighboring gene U6 spliceosomal RNA Neighboring gene large ribosomal subunit protein uL30-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chimpanzee CD4+ T cells are relatively insensitive to HIV-1 envelope-mediated inhibition of CD154 up-regulation. Rutjens E, et al. Eur J Immunol, 2008 Apr. PMID 18383039

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CD40 receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD40 ligand
Names
CD40 ligand (TNF superfamily, member 5, hyper-IgM syndrome)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072421.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    134086931..134098556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016944270.2 → XP_016799759.1  CD40 ligand

    UniProtKB/TrEMBL
    A0A2I3SM76, A0A2J8JP68, A0A2J8JPA3, A0A663D5Y7, A0A663D6T9, H2QZ64
    Related
    ENSPTRP00000077615.1
    Conserved Domains (1) summary
    pfam00229
    Location:139 → 261
    TNF; TNF(tumor Necrosis Factor) family
Nucleotide Protein
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