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PNPLA8 patatin like phospholipase domain containing 8 [ Pan troglodytes (chimpanzee) ]

Gene ID: 472484, updated on 29-Mar-2024

Summary

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Official Symbol
PNPLA8provided by VGNC
Official Full Name
patatin like phospholipase domain containing 8provided by VGNC
Primary source
VGNC:VGNC:4472
Locus tag
CK820_G0011899
See related
Ensembl:ENSPTRG00000019590
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 6 NC_072404.2 (123863866..123917923, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 7 NC_072405.1 (117916489..117959984, complement)

Chromosome 6 - NC_072404.2Genomic Context describing neighboring genes Neighboring gene neuronal cell adhesion molecule Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC134810632 Neighboring gene large ribosomal subunit protein uL30-like Neighboring gene DnaJ heat shock protein family (Hsp40) member B9 Neighboring gene THAP domain containing 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-independent phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arachidonic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-independent phospholipase A2-gamma
XP_003951157.1
XP_009452254.1
XP_016813515.1
XP_063671599.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    123863866..123917923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063815529.1 → XP_063671599.1  calcium-independent phospholipase A2-gamma isoform X4

  2. XM_003951108.6 → XP_003951157.1  calcium-independent phospholipase A2-gamma isoform X2

    See identical proteins and their annotated locations for XP_003951157.1

    UniProtKB/TrEMBL
    A0A2J8QXU7, A0A2J8QXU8, A0A6D2Y026, H2QV86
    Related
    ENSPTRP00000033545.4
    Conserved Domains (1) summary
    cd07211
    Location:435 → 741
    Pat_PNPLA8; Patatin-like phospholipase domain containing protein 8

  3. XM_009453979.5 → XP_009452254.1  calcium-independent phospholipase A2-gamma isoform X1

    See identical proteins and their annotated locations for XP_009452254.1

    UniProtKB/TrEMBL
    A0A2J8QXU7
    Conserved Domains (1) summary
    cd07211
    Location:435 → 752
    Pat_PNPLA8; Patatin-like phospholipase domain containing protein 8

  4. XM_016958026.4 → XP_016813515.1  calcium-independent phospholipase A2-gamma isoform X3

    UniProtKB/TrEMBL
    A0A2J8QXT8
    Conserved Domains (1) summary
    cl11396
    Location:435 → 637
    Patatin_and_cPLA2; Patatins and Phospholipases
Nucleotide Protein
Heading Accession and Version

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