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RNF14 ring finger protein 14 [ Pan troglodytes (chimpanzee) ]

Gene ID: 471678, updated on 3-Apr-2024

Summary

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Official Symbol
RNF14provided by VGNC
Official Full Name
ring finger protein 14provided by VGNC
Primary source
VGNC:VGNC:4150
Locus tag
CK820_G0009948
See related
Ensembl:ENSPTRG00000017356
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (139666821..139788076)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (139704965..139806153)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104006583 Neighboring gene glycine cleavage system H protein, mitochondrial-like Neighboring gene DAP3 binding cell death enhancer 1 Neighboring gene protocadherin 12 Neighboring gene large ribosomal subunit protein uL11m-like Neighboring gene glucosamine-6-phosphate deaminase 1 Neighboring gene Nedd4 family interacting protein 1 Neighboring gene uncharacterized LOC104006586 Neighboring gene sprouty RTK signaling antagonist 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF14
XP_001152565.1
XP_001152755.1
XP_001152825.1
XP_009448121.1
XP_016809464.1
XP_063666860.1
XP_063666861.1
XP_063666863.1
XP_063666864.1
XP_063666865.1
XP_063666866.1
XP_063666867.1
XP_063666868.1
XP_527056.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    139666821..139788076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063810794.1 → XP_063666864.1  E3 ubiquitin-protein ligase RNF14 isoform X2

    UniProtKB/TrEMBL
    A0A2J8NIV9, G2HFT7

  2. XM_063810791.1 → XP_063666861.1  E3 ubiquitin-protein ligase RNF14 isoform X2

    UniProtKB/TrEMBL
    A0A2J8NIV9, G2HFT7

  3. XM_001152565.7 → XP_001152565.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    See identical proteins and their annotated locations for XP_001152565.1

    UniProtKB/TrEMBL
    A0A2J8NIV6, A0A6D2XXK0, H2R4G2
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  4. XM_063810795.1 → XP_063666865.1  E3 ubiquitin-protein ligase RNF14 isoform X2

    UniProtKB/TrEMBL
    A0A2J8NIV9, G2HFT7

  5. XM_001152825.6 → XP_001152825.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    See identical proteins and their annotated locations for XP_001152825.1

    UniProtKB/TrEMBL
    A0A2J8NIV6, A0A6D2XXK0, H2R4G2
    Related
    ENSPTRP00000047147.3
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  6. XM_063810790.1 → XP_063666860.1  E3 ubiquitin-protein ligase RNF14 isoform X2

    UniProtKB/TrEMBL
    A0A2J8NIV9, G2HFT7

  7. XM_527056.8 → XP_527056.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    See identical proteins and their annotated locations for XP_527056.1

    UniProtKB/TrEMBL
    A0A2J8NIV6, A0A6D2XXK0, H2R4G2
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  8. XM_063810798.1 → XP_063666868.1  E3 ubiquitin-protein ligase RNF14 isoform X2

    UniProtKB/TrEMBL
    A0A2J8NIV9, G2HFT7

  9. XM_001152755.7 → XP_001152755.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    See identical proteins and their annotated locations for XP_001152755.1

    UniProtKB/TrEMBL
    A0A2J8NIV6, A0A6D2XXK0, H2R4G2
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  10. XM_063810793.1 → XP_063666863.1  E3 ubiquitin-protein ligase RNF14 isoform X2

    UniProtKB/TrEMBL
    A0A2J8NIV9, G2HFT7

  11. XM_063810797.1 → XP_063666867.1  E3 ubiquitin-protein ligase RNF14 isoform X2

    UniProtKB/TrEMBL
    A0A2J8NIV9, G2HFT7

  12. XM_009449846.4 → XP_009448121.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    See identical proteins and their annotated locations for XP_009448121.1

    UniProtKB/TrEMBL
    A0A2J8NIV6, A0A6D2XXK0, H2R4G2
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  13. XM_063810796.1 → XP_063666866.1  E3 ubiquitin-protein ligase RNF14 isoform X2

    UniProtKB/TrEMBL
    A0A2J8NIV9, G2HFT7

  14. XM_016953975.3 → XP_016809464.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    UniProtKB/TrEMBL
    A0A2J8NIV6, A0A6D2XXK0, H2R4G2
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

RNA

  1. XR_010157031.1 RNA Sequence

  2. XR_010157033.1 RNA Sequence

  3. XR_008548090.2 RNA Sequence

  4. XR_010157030.1 RNA Sequence

  5. XR_010157032.1 RNA Sequence

Nucleotide Protein
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