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PATZ1 POZ/BTB and AT hook containing zinc finger 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 470184, updated on 29-Mar-2024

Summary

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Official Symbol
PATZ1provided by VGNC
Official Full Name
POZ/BTB and AT hook containing zinc finger 1provided by VGNC
Primary source
VGNC:VGNC:12910
Locus tag
CK820_G0024559
See related
Ensembl:ENSPTRG00000014268
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
ZNF278
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 23 NC_086016.1 (33444907..33464877, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 22 NC_072420.1 (26477305..26498106, complement)

Chromosome 23 - NC_086016.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene LIM domain kinase 2 Neighboring gene phosphoinositide-3-kinase interacting protein 1 Neighboring gene uncharacterized LOC104003747 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
POZ-, AT hook-, and zinc finger-containing protein 1
Names
zinc finger protein 278

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086016.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    33444907..33464877 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003317207.6 → XP_003317255.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_003317255.1

    UniProtKB/TrEMBL
    A0A2I3RNK9, A0A2J8QP04, A0A6D2XVY7, K7CNL0
    Related
    ENSPTRP00000074822.1
    Conserved Domains (6) summary
    COG5048
    Location:357 → 408
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:357 → 377
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:561 → 582
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18207
    Location:14 → 162
    BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
    pfam15909
    Location:382 → 461
    zf-C2H2_8; C2H2-type zinc ribbon
    pfam16637
    Location:492 → 558
    zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz

  2. XM_003317209.7 → XP_003317257.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X3

    See identical proteins and their annotated locations for XP_003317257.1

    UniProtKB/TrEMBL
    A0A2J8QP00, K7D0S9
    Conserved Domains (5) summary
    COG5048
    Location:381 → 451
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:329 → 406
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:357 → 377
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18207
    Location:14 → 162
    BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
    pfam13912
    Location:442 → 467
    zf-C2H2_6; C2H2-type zinc finger

  3. XM_525568.9 → XP_525568.3  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_525568.3

    UniProtKB/TrEMBL
    A0A2I3RNK9, A0A2J8QP19, A0A6D2WHV6, H2QLI5
    Related
    ENSPTRP00000024578.4
    Conserved Domains (6) summary
    COG5048
    Location:381 → 518
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:357 → 377
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:607 → 628
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18207
    Location:14 → 162
    BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
    pfam00096
    Location:357 → 377
    zf-C2H2; Zinc finger, C2H2 type
    pfam16637
    Location:536 → 604
    zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz

  4. XM_003317208.6 → XP_003317256.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X4

    See identical proteins and their annotated locations for XP_003317256.1

    UniProtKB/TrEMBL
    A0A2J8QP06, A0A6D2WQN0, K7B838
    Related
    ENSPTRP00000069773.1
    Conserved Domains (4) summary
    COG5189
    Location:379 → 436
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:357 → 377
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18207
    Location:14 → 162
    BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
    pfam13465
    Location:369 → 394
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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