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NR5A2 nuclear receptor subfamily 5 group A member 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 469631, updated on 29-Mar-2024

Summary

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Official Symbol
NR5A2provided by VGNC
Official Full Name
nuclear receptor subfamily 5 group A member 2provided by VGNC
Primary source
VGNC:VGNC:6923
Locus tag
CK820_G0038743
See related
Ensembl:ENSPTRG00000001818
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See NR5A2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (48917633..49067350, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (182256003..182405720)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134808433 Neighboring gene putative cyclin-related protein FAM58B Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor subfamily 5 group A member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    48917633..49067350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001142695.2 → XP_001142695.1  nuclear receptor subfamily 5 group A member 2 isoform X1

    See identical proteins and their annotated locations for XP_001142695.1

    UniProtKB/TrEMBL
    A0A2I3RKK0, A0A2J8KHY3, A0A6D2XWY6, H2Q0V0
    Related
    ENSPTRP00000003036.2
    Conserved Domains (2) summary
    cd07069
    Location:301 → 541
    NR_LBD_Lrh-1; The ligand binding domain of the liver receptor homolog-1, a member of nuclear receptor superfamily,
    cd07167
    Location:86 → 178
    NR_DBD_Lrh-1_like; The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers

  2. XM_525014.7 → XP_525014.2  nuclear receptor subfamily 5 group A member 2 isoform X2

    See identical proteins and their annotated locations for XP_525014.2

    UniProtKB/TrEMBL
    A0A2I3RGL7, A0A2I3RKK0, A0A2J8KHX7, A0A6D2WEP6
    Related
    ENSPTRP00000063522.1
    Conserved Domains (2) summary
    cd07069
    Location:255 → 495
    NR_LBD_Lrh-1; The ligand binding domain of the liver receptor homolog-1, a member of nuclear receptor superfamily,
    cd07167
    Location:40 → 132
    NR_DBD_Lrh-1_like; The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers

  3. XM_009440427.5 → XP_009438702.1  nuclear receptor subfamily 5 group A member 2 isoform X4

    See identical proteins and their annotated locations for XP_009438702.1

    UniProtKB/TrEMBL
    A0A2I3RKK0
    Related
    ENSPTRP00000064891.1
    Conserved Domains (2) summary
    cd07069
    Location:261 → 501
    NR_LBD_Lrh-1; The ligand binding domain of the liver receptor homolog-1, a member of nuclear receptor superfamily,
    cd07167
    Location:46 → 138
    NR_DBD_Lrh-1_like; The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers

  4. XM_009440407.5 → XP_009438682.1  nuclear receptor subfamily 5 group A member 2 isoform X3

    See identical proteins and their annotated locations for XP_009438682.1

    UniProtKB/TrEMBL
    A0A2I3RKK0
    Related
    ENSPTRP00000079398.1
    Conserved Domains (2) summary
    cd07069
    Location:234 → 474
    NR_LBD_Lrh-1; The ligand binding domain of the liver receptor homolog-1, a member of nuclear receptor superfamily,
    cd07167
    Location:19 → 111
    NR_DBD_Lrh-1_like; The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers
Nucleotide Protein
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