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ATF3 activating transcription factor 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 469143, updated on 3-Apr-2024

Summary

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Official Symbol
ATF3provided by VGNC
Official Full Name
activating transcription factor 3provided by VGNC
Primary source
VGNC:VGNC:10546
Locus tag
CK820_G0012680
See related
Ensembl:ENSPTRG00000001962
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (36496262..36551936, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (194815074..194827082)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107970102 Neighboring gene golgi associated RAB2 interactor family member 4 Neighboring gene uncharacterized LOC107970100 Neighboring gene neudesin neurotrophic factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    36496262..36551936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063792364.1 → XP_063648434.1  cyclic AMP-dependent transcription factor ATF-3

    UniProtKB/TrEMBL
    A0A2J8QVF6, A0A6D2W3W2, H2R845, K7D430

  2. XM_016938383.4 → XP_016793872.1  cyclic AMP-dependent transcription factor ATF-3

    UniProtKB/TrEMBL
    A0A2J8QVD3, A0A2J8QVF6, A0A6D2W3W2, H2R845, K7D430
    Conserved Domains (1) summary
    cd14722
    Location:96 → 149
    bZIP_ATF3; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-3 (ATF-3) and similar proteins: a DNA-binding and dimerization domain

  3. XM_016938385.4 → XP_016793874.1  cyclic AMP-dependent transcription factor ATF-3

    UniProtKB/TrEMBL
    A0A2J8QVD3, A0A2J8QVF6, A0A6D2W3W2, H2R845, K7D430
    Related
    ENSPTRP00000051186.4
    Conserved Domains (1) summary
    cd14722
    Location:96 → 149
    bZIP_ATF3; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-3 (ATF-3) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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