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CCNA1 cyclin A1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 467260, updated on 3-Apr-2024

Summary

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Official Symbol
CCNA1provided by VGNC
Official Full Name
cyclin A1provided by VGNC
Primary source
VGNC:VGNC:5046
Locus tag
CK820_G0019710
See related
Ensembl:ENSPTRG00000005784
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
cyclin-A1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 14 NC_072412.2 (35546957..35558271)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 13 NC_072411.1 (30317704..30330950)

Chromosome 14 - NC_072412.2Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 169 Neighboring gene U6 spliceosomal RNA Neighboring gene spartin Neighboring gene putative uncharacterized protein SPART-AS1 Neighboring gene uncharacterized LOC129136817 Neighboring gene serine rich and transmembrane domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic cell cycle phase transition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cyclin A2-CDK2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-A1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246437.1 → NP_001233366.1  cyclin-A1

    See identical proteins and their annotated locations for NP_001233366.1

    Status: PROVISIONAL

    Source sequence(s)
    AK305622
    UniProtKB/TrEMBL
    A0A2J8MLI5, A0A6D2X7C9, G2HFV8, H2Q7F3
    Related
    ENSPTRP00000009850.4, ENSPTRT00000010644.4
    Conserved Domains (2) summary
    cd20560
    Location:132 → 294
    CYCLIN_CCNA1_rpt1; first cyclin box found in cyclin-A1 (CCNA1)
    cd20563
    Location:298 → 420
    CYCLIN_CCNA1_rpt2; second cyclin box found in cyclin-A1 (CCNA1) and similar proteins

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072412.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    35546957..35558271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009426819.4 → XP_009425094.1  cyclin-A1 isoform X3

    See identical proteins and their annotated locations for XP_009425094.1

    UniProtKB/TrEMBL
    A0A2J8MLI5, A0A6D2X7C9, G2HFV8, H2Q7F3
    Conserved Domains (2) summary
    cd20560
    Location:132 → 294
    CYCLIN_CCNA1_rpt1; first cyclin box found in cyclin-A1 (CCNA1)
    cd20563
    Location:298 → 420
    CYCLIN_CCNA1_rpt2; second cyclin box found in cyclin-A1 (CCNA1) and similar proteins

  2. XM_016924977.3 → XP_016780466.1  cyclin-A1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8MLI5, A0A6D2X7C9, G2HFV8, H2Q7F3
    Conserved Domains (2) summary
    cd20560
    Location:132 → 294
    CYCLIN_CCNA1_rpt1; first cyclin box found in cyclin-A1 (CCNA1)
    cd20563
    Location:298 → 420
    CYCLIN_CCNA1_rpt2; second cyclin box found in cyclin-A1 (CCNA1) and similar proteins

  3. XM_016924976.3 → XP_016780465.1  cyclin-A1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8MLI5, A0A6D2X7C9, G2HFV8, H2Q7F3
    Conserved Domains (2) summary
    cd20560
    Location:132 → 294
    CYCLIN_CCNA1_rpt1; first cyclin box found in cyclin-A1 (CCNA1)
    cd20563
    Location:298 → 420
    CYCLIN_CCNA1_rpt2; second cyclin box found in cyclin-A1 (CCNA1) and similar proteins

  4. XM_054664802.1 → XP_054520777.1  cyclin-A1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8MLI5, A0A6D2X7C9, G2HFV8, H2Q7F3

  5. XM_063791874.1 → XP_063647944.1  cyclin-A1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8MLI5, A0A6D2X7C9, G2HFV8, H2Q7F3

  6. XM_009426817.4 → XP_009425092.1  cyclin-A1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8MLJ8
    Conserved Domains (2) summary
    pfam00134
    Location:214 → 340
    Cyclin_N; Cyclin, N-terminal domain
    cl25647
    Location:187 → 454
    Cyclin_N2; N-terminal region of cyclin_N

  7. XM_009426818.3 → XP_009425093.1  cyclin-A1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8MLH6
    Conserved Domains (2) summary
    pfam00134
    Location:213 → 339
    Cyclin_N; Cyclin, N-terminal domain
    cl25647
    Location:186 → 453
    Cyclin_N2; N-terminal region of cyclin_N

  8. XM_009426820.4 → XP_009425095.1  cyclin-A1 isoform X3

    See identical proteins and their annotated locations for XP_009425095.1

    UniProtKB/TrEMBL
    A0A2J8MLI5, A0A6D2X7C9, G2HFV8, H2Q7F3
    Related
    ENSPTRP00000070605.1
    Conserved Domains (2) summary
    cd20560
    Location:132 → 294
    CYCLIN_CCNA1_rpt1; first cyclin box found in cyclin-A1 (CCNA1)
    cd20563
    Location:298 → 420
    CYCLIN_CCNA1_rpt2; second cyclin box found in cyclin-A1 (CCNA1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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