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WNT5B Wnt family member 5B [ Pan troglodytes (chimpanzee) ]

Gene ID: 467191, updated on 3-Apr-2024

Summary

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Official Symbol
WNT5Bprovided by VGNC
Official Full Name
Wnt family member 5Bprovided by VGNC
Primary source
VGNC:VGNC:10084
Locus tag
CK820_G0037431
See related
Ensembl:ENSPTRG00000004519
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (8682544..8806601)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (7327330..7451277)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134807452 Neighboring gene RAD52 homolog, DNA repair protein Neighboring gene ELKS/RAB6-interacting/CAST family member 1 Neighboring gene uncharacterized LOC107967815 Neighboring gene F-box and leucine rich repeat protein 14 Neighboring gene uncharacterized LOC129136497 Neighboring gene protein SDA1 homolog Neighboring gene adiponectin receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables frizzled binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Wnt-5b
Names
wingless-type MMTV integration site family, member 5B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    8682544..8806601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003952080.6 → XP_003952129.2  protein Wnt-5b isoform X1

    Conserved Domains (1) summary
    cd19348
    Location:69 → 380
    Wnt_Wnt5b; Wnt domain found in protein Wnt-5b and similar proteins

  2. XM_063786225.1 → XP_063642295.1  protein Wnt-5b isoform X5

    UniProtKB/TrEMBL
    A0A2J8KMH0, A0A6D2Y9Z7, H2Q569

  3. XM_009424600.5 → XP_009422875.1  protein Wnt-5b isoform X5

    See identical proteins and their annotated locations for XP_009422875.1

    UniProtKB/TrEMBL
    A0A2J8KMH0, A0A6D2Y9Z7, H2Q569
    Conserved Domains (1) summary
    cd19348
    Location:48 → 359
    Wnt_Wnt5b; Wnt domain found in protein Wnt-5b and similar proteins

  4. XM_009424593.5 → XP_009422868.1  protein Wnt-5b isoform X2

    Conserved Domains (1) summary
    pfam00110
    Location:175 → 480
    wnt; wnt family

  5. XM_009424594.5 → XP_009422869.1  protein Wnt-5b isoform X3

    Conserved Domains (1) summary
    pfam00110
    Location:164 → 469
    wnt; wnt family

  6. XM_009424599.5 → XP_009422874.1  protein Wnt-5b isoform X5

    See identical proteins and their annotated locations for XP_009422874.1

    UniProtKB/TrEMBL
    A0A2J8KMH0, A0A6D2Y9Z7, H2Q569
    Conserved Domains (1) summary
    cd19348
    Location:48 → 359
    Wnt_Wnt5b; Wnt domain found in protein Wnt-5b and similar proteins

  7. XM_009424595.5 → XP_009422870.1  protein Wnt-5b isoform X4

    Conserved Domains (1) summary
    cd19348
    Location:149 → 460
    Wnt_Wnt5b; Wnt domain found in protein Wnt-5b and similar proteins

  8. XM_009424598.5 → XP_009422873.1  protein Wnt-5b isoform X5

    See identical proteins and their annotated locations for XP_009422873.1

    UniProtKB/TrEMBL
    A0A2J8KMH0, A0A6D2Y9Z7, H2Q569
    Related
    ENSPTRP00000007733.3
    Conserved Domains (1) summary
    cd19348
    Location:48 → 359
    Wnt_Wnt5b; Wnt domain found in protein Wnt-5b and similar proteins
Nucleotide Protein
Heading Accession and Version

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