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HDAC7 histone deacetylase 7 [ Pan troglodytes (chimpanzee) ]

Gene ID: 466968, updated on 3-Apr-2024

Summary

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Official Symbol
HDAC7provided by VGNC
Official Full Name
histone deacetylase 7provided by VGNC
Primary source
VGNC:VGNC:5414
Locus tag
CK820_G0026956
See related
Ensembl:ENSPTRG00000004868
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See HDAC7 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (48034683..48072400)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (46718966..46756259)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 106C Neighboring gene uncharacterized LOC134807447 Neighboring gene vitamin D receptor Neighboring gene solute carrier family 48 member 1 Neighboring gene Rap guanine nucleotide exchange factor 3 Neighboring gene uncharacterized LOC134807477 Neighboring gene uncharacterized LOC104001553 Neighboring gene endonuclease, poly(U) specific

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 7
XP_016779040.1
XP_016779041.1
XP_016779042.1
XP_016779044.1
XP_054520301.1
XP_063641770.1
XP_063641771.1
XP_063641772.1
XP_063641773.1
XP_063641774.1
XP_063641775.1
XP_063641776.1
XP_063641777.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    48034683..48072400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063785704.1 → XP_063641774.1  histone deacetylase 7 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SBG8, A0A2J8LQH8, A0A6D2X9L1

  2. XM_054664326.2 → XP_054520301.1  histone deacetylase 7 isoform X5

  3. XM_016923551.4 → XP_016779040.1  histone deacetylase 7 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RDI1, A0A2J8LQJ3, A0A6D2Y1E3, K7DID2
    Related
    ENSPTRP00000080898.1
    Conserved Domains (1) summary
    cd10008
    Location:557 → 934
    HDAC7; Histone deacetylase 7

  4. XM_016923553.3 → XP_016779042.1  histone deacetylase 7 isoform X3

    UniProtKB/TrEMBL
    A0A2I3RDI1, A0A2J8LQJ0, A0A6D2WCI7, K7D8G5
    Related
    ENSPTRP00000070653.1
    Conserved Domains (1) summary
    cd10008
    Location:520 → 897
    HDAC7; Histone deacetylase 7

  5. XM_016923552.3 → XP_016779041.1  histone deacetylase 7 isoform X2

    UniProtKB/TrEMBL
    A0A2I3RDI1, A0A2J8LQI7, A0A6D2XXE6, H2Q5S6
    Related
    ENSPTRP00000008320.6
    Conserved Domains (1) summary
    cd10008
    Location:540 → 917
    HDAC7; Histone deacetylase 7

  6. XM_063785706.1 → XP_063641776.1  histone deacetylase 7 isoform X6

  7. XM_063785700.1 → XP_063641770.1  histone deacetylase 7 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SBG8, A0A2J8LQH8, A0A6D2X9L1

  8. XM_063785702.1 → XP_063641772.1  histone deacetylase 7 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SBG8, A0A2J8LQH8, A0A6D2X9L1

  9. XM_063785701.1 → XP_063641771.1  histone deacetylase 7 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SBG8, A0A2J8LQH8, A0A6D2X9L1

  10. XM_063785705.1 → XP_063641775.1  histone deacetylase 7 isoform X6

  11. XM_063785703.1 → XP_063641773.1  histone deacetylase 7 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SBG8, A0A2J8LQH8, A0A6D2X9L1

  12. XM_063785707.1 → XP_063641777.1  histone deacetylase 7 isoform X6

  13. XM_016923555.4 → XP_016779044.1  histone deacetylase 7 isoform X4

    UniProtKB/TrEMBL
    A0A2I3RDI1, A0A2I3SBG8, A0A2J8LQH8, A0A6D2X9L1
    Related
    ENSPTRP00000074194.1
    Conserved Domains (1) summary
    cd10008
    Location:518 → 895
    HDAC7; Histone deacetylase 7
Nucleotide Protein
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