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SHOC2 SHOC2 leucine rich repeat scaffold protein [ Pan troglodytes (chimpanzee) ]

Gene ID: 466200, updated on 3-Apr-2024

Summary

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Official Symbol
SHOC2provided by VGNC
Official Full Name
SHOC2 leucine rich repeat scaffold proteinprovided by VGNC
Primary source
VGNC:VGNC:12500
Locus tag
CK820_G0003954
See related
Ensembl:ENSPTRG00000002941
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 8 NC_072406.2 (123039140..123133131)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 10 NC_072408.1 (113656027..113750015)

Chromosome 8 - NC_072406.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134807207 Neighboring gene programmed cell death 4 Neighboring gene uncharacterized LOC134807209 Neighboring gene BBSome interacting protein 1 Neighboring gene large ribosomal subunit protein uL13-like Neighboring gene microRNA mir-548e Neighboring gene uncharacterized LOC134807208 Neighboring gene uncharacterized LOC129136146 Neighboring gene adrenoceptor alpha 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat protein SHOC-2
Names
soc-2 suppressor of clear homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072406.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    123039140..123133131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_521602.8 → XP_521602.2  leucine-rich repeat protein SHOC-2 isoform X1

    See identical proteins and their annotated locations for XP_521602.2

    UniProtKB/TrEMBL
    A0A2J8PCI9, A0A6D2Y003, H2Q2K4
    Related
    ENSPTRP00000081192.1
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_016919317.4 → XP_016774806.1  leucine-rich repeat protein SHOC-2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8PCI9, A0A6D2Y003, H2Q2K4
    Related
    ENSPTRP00000005186.4
    Conserved Domains (3) summary
    PLN03150
    Location:453 → 527
    PLN03150; hypothetical protein; Provisional
    PLN00113
    Location:115 → 483
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:240 → 262
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_063782102.1 → XP_063638172.1  leucine-rich repeat protein SHOC-2 isoform X2

  4. XM_054659890.2 → XP_054515865.1  leucine-rich repeat protein SHOC-2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8PCI9, A0A6D2Y003, H2Q2K4

  5. XM_063782099.1 → XP_063638169.1  leucine-rich repeat protein SHOC-2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8PCI9, A0A6D2Y003, H2Q2K4

  6. XM_063782100.1 → XP_063638170.1  leucine-rich repeat protein SHOC-2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8PCI9, A0A6D2Y003, H2Q2K4
Nucleotide Protein
Heading Accession and Version

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