GYS2 glycogen synthase 2 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: GYS2provided by VGNC
Official Full Name: glycogen synthase 2provided by VGNC
Primary source: VGNC:VGNC:5412
Locus tag: CK820_G0019091
See related: Ensembl:ENSPTRG00000004761
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 12

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	10	NC_072408.2 (73921983..73987845)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	12	NC_072410.1 (72538442..72604302)

Chromosome 10 - NC_072408.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

G62406 (e-PCR)
- UniSTS:139320

SHGC-105992 (e-PCR)
- UniSTS:169558

G62378 (e-PCR)
- UniSTS:139398

RH79957 (e-PCR)
- UniSTS:84128

D12S155 (e-PCR)
- UniSTS:148903

GYS2_7800 (e-PCR)
- UniSTS:468452

SHGC-77946 (e-PCR)
- UniSTS:101358

D12S1066 (e-PCR), detects polymorphism
- UniSTS:82165

G62379 (e-PCR)
- UniSTS:139258

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables glycogen (starch) synthase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in glycogen biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: glycogen [starch] synthase, liver

Names: glycogen synthase 2 (liver)

XP_009424029.1

EC 2.4.1.11

XP_054520458.1

EC 2.4.1.11

XP_520790.2

EC 2.4.1.11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

73921983..73987845

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_520790.8 → XP_520790.2 glycogen [starch] synthase, liver isoform X1

See identical proteins and their annotated locations for XP_520790.2

UniProtKB/TrEMBL

A0A2J8QRB6, A0A2J8QRB7, A0A6D2XBI0, H2Q5L0

Related

ENSPTRP00000008127.4

Conserved Domains (1) summary

pfam05693
Location:33 → 658

Glycogen_syn; Glycogen synthase
XM_054664483.2 → XP_054520458.1 glycogen [starch] synthase, liver isoform X2
XM_009425754.5 → XP_009424029.1 glycogen [starch] synthase, liver isoform X3

UniProtKB/TrEMBL

A0A2J8QRB6

Conserved Domains (2) summary

cd03793
Location:3 → 538

GT1_Glycogen_synthase_GSY2_like; Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the ...

pfam05693
Location:3 → 581

Glycogen_syn; Glycogen synthase