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ABCA1 ATP binding cassette subfamily A member 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 464630, updated on 29-Mar-2024

Summary

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Official Symbol
ABCA1provided by VGNC
Official Full Name
ATP binding cassette subfamily A member 1provided by VGNC
Primary source
VGNC:VGNC:4595
Locus tag
CK820_G0027265
See related
Ensembl:ENSPTRG00000021219
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
51
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 11 NC_072409.2 (33507496..33654799)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 9 NC_072407.1 (85213918..85361318, complement)

Chromosome 11 - NC_072409.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 44 member 1 Neighboring gene uncharacterized LOC134807642 Neighboring gene uncharacterized LOC129135974 Neighboring gene uncharacterized LOC134807643 Neighboring gene nipsnap homolog 3B Neighboring gene nipsnap homolog 3A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylcholine floppase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylserine floppase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid efflux IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family A member 1; phospholipid-transporting ATPase ABCA1
Names
ATP-binding cassette, sub-family A (ABC1), member 1
ATP-binding cassette, sub-family A member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072409.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    33507496..33654799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001138040.6 → XP_001138040.1  phospholipid-transporting ATPase ABCA1 isoform X2

    See identical proteins and their annotated locations for XP_001138040.1

    UniProtKB/TrEMBL
    A0A2J8LPN0, A0A6D2X5A8, H2R6H1, K7CGI9
    Related
    ENSPTRP00000049117.2
    Conserved Domains (1) summary
    cl28181
    Location:6 → 2236
    AAA; ATPases associated with a variety of cellular activities

  2. XM_016961357.4 → XP_016816846.1  phospholipid-transporting ATPase ABCA1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RDI4
    Related
    ENSPTRP00000062700.1

RNA

  1. XR_010148603.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials
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