GTF2E2 general transcription factor IIE subunit 2 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: GTF2E2provided by VGNC
Official Full Name: general transcription factor IIE subunit 2provided by VGNC
Primary source: VGNC:VGNC:6675
Locus tag: CK820_G0013225
See related: Ensembl:ENSPTRG00000022529
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	7	NC_072405.2 (38956496..39036261, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	8	NC_072406.1 (42533358..42613128, complement)

Chromosome 7 - NC_072405.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

G36444 (e-PCR)
- UniSTS:73474

D8S2241 (e-PCR)
- UniSTS:473890

WI-19229 (e-PCR)
- UniSTS:62504

D8S2214 (e-PCR)
- UniSTS:473940

RH103819 (e-PCR)
- UniSTS:98144

RH93000 (e-PCR)
- UniSTS:88968

RH47774 (e-PCR)
- UniSTS:54922

D8S2166 (e-PCR)
- UniSTS:473741

G32125 (e-PCR)
- UniSTS:75466

D8S1862 (e-PCR)
- UniSTS:8178

RH11463 (e-PCR)
- UniSTS:79611

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables TFIIH-class transcription factor complex binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in transcription initiation at RNA polymerase II promoter	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of transcription factor TFIIE complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transcription initiation factor IIE subunit beta

Names: general transcription factor IIE, polypeptide 2, beta 34kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072405.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

38956496..39036261 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001168104.4 → XP_001168104.1 transcription initiation factor IIE subunit beta isoform X1

See identical proteins and their annotated locations for XP_001168104.1

UniProtKB/TrEMBL

A0A2J8N887, A0A6D2XXH3, H2QZJ1

Related

ENSPTRP00000039088.2

Conserved Domains (2) summary

cd07977
Location:68 → 146

TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

pfam18121
Location:146 → 204

TFA2_Winged_2; TFA2 Winged helix domain 2
XM_063816983.1 → XP_063673053.1 transcription initiation factor IIE subunit beta isoform X2