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TAF6 TATA-box binding protein associated factor 6 [ Pan troglodytes (chimpanzee) ]

Gene ID: 463588, updated on 3-Apr-2024

Summary

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Official Symbol
TAF6provided by VGNC
Official Full Name
TATA-box binding protein associated factor 6provided by VGNC
Primary source
VGNC:VGNC:8768
Locus tag
CK820_G0047492
See related
Ensembl:ENSPTRG00000019474
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 6 NC_072404.2 (109573906..109586237, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 7 NC_072405.1 (105920642..105932971, complement)

Chromosome 6 - NC_072404.2Genomic Context describing neighboring genes Neighboring gene microRNA mir-106b Neighboring gene minichromosome maintenance complex component 7 Neighboring gene microRNA mir-93 Neighboring gene adaptor related protein complex 4 subunit mu 1 Neighboring gene canopy FGF signaling regulator 4 Neighboring gene metallo-beta-lactamase domain containing 1 Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SLIK (SAGA-like) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 6
Names
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    109573906..109586237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003318611.3 → XP_003318659.1  transcription initiation factor TFIID subunit 6 isoform X5

    See identical proteins and their annotated locations for XP_003318659.1

    UniProtKB/TrEMBL
    A0A2I3REX6, A0A2J8Q0K9, A0A2J8Q0L1, A0A6D2XU79
    Related
    ENSPTRP00000063219.1, ENSPTRT00000102974.1
    Conserved Domains (1) summary
    cd08050
    Location:52 → 425
    TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

  2. XM_063814832.1 → XP_063670902.1  transcription initiation factor TFIID subunit 6 isoform X3

  3. XM_001139475.6 → XP_001139475.2  transcription initiation factor TFIID subunit 6 isoform X1

    See identical proteins and their annotated locations for XP_001139475.2

    UniProtKB/TrEMBL
    A0A2J8Q0L1, A0A2J8Q0L5, A0A6D2WYK6, H2QV18
    Related
    ENSPTRP00000033329.4
    Conserved Domains (1) summary
    cd08050
    Location:15 → 388
    TAF6; TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

  4. XM_054656059.2 → XP_054512034.1  transcription initiation factor TFIID subunit 6 isoform X2

  5. XM_054656060.2 → XP_054512035.1  transcription initiation factor TFIID subunit 6 isoform X4

Nucleotide Protein
Heading Accession and Version

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