EBF1 EBF transcription factor 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: EBF1provided by VGNC
Official Full Name: EBF transcription factor 1provided by VGNC
Primary source: VGNC:VGNC:11935
Locus tag: CK820_G0010219
See related: Ensembl:ENSPTRG00000017477
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	4	NC_072402.2 (156389397..156791612, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	5	NC_072403.1 (156410284..156812484, complement)

Chromosome 4 - NC_072402.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

EBF1 (e-PCR)
- UniSTS:504860

SHGC-106353 (e-PCR)
- UniSTS:169758

D5S412 (e-PCR), detects polymorphism
- UniSTS:13353

D5S1441 (e-PCR)
- UniSTS:73787

SHGC-68360 (e-PCR)
- UniSTS:95551

Ebf1 (e-PCR), detects polymorphism
- UniSTS:465475

G66866 (e-PCR)
- UniSTS:166727

SHGC-80814 (e-PCR)
- UniSTS:102476

WI-17761 (e-PCR)
- UniSTS:20325

RH103570 (e-PCR)
- UniSTS:97895

WI-12566 (e-PCR)
- UniSTS:28527

D5S2038 (e-PCR), detects polymorphism
- UniSTS:49011

RH103848 (e-PCR)
- UniSTS:98173

RH48737 (e-PCR)
- UniSTS:49536

TUDPEc277 (e-PCR)
- UniSTS:504982

bac5789T (e-PCR)
- UniSTS:181667

D5S2460 (e-PCR)
- UniSTS:29096

RH121062 (e-PCR)
- UniSTS:132283

MARC_23656-23657:1029504842:1 (e-PCR)
- UniSTS:268737

A007K35 (e-PCR)
- UniSTS:62660

D5S412 (e-PCR), detects polymorphism
- UniSTS:50418

SHGC-147532 (e-PCR)
- UniSTS:175862

D21S1810 (e-PCR)
- UniSTS:77561

SHGC-68598 (e-PCR)
- UniSTS:95484

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transcription factor COE1

Names: early B cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

156389397..156791612 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063811625.1 → XP_063667695.1 transcription factor COE1 isoform X8
XM_063811629.1 → XP_063667699.1 transcription factor COE1 isoform X12
XM_063811624.1 → XP_063667694.1 transcription factor COE1 isoform X7
XM_063811634.1 → XP_063667704.1 transcription factor COE1 isoform X19
XM_063811626.1 → XP_063667696.1 transcription factor COE1 isoform X10
XM_063811642.1 → XP_063667712.1 transcription factor COE1 isoform X26
XM_063811633.1 → XP_063667703.1 transcription factor COE1 isoform X18
XM_063811632.1 → XP_063667702.1 transcription factor COE1 isoform X17
XM_009450060.5 → XP_009448335.1 transcription factor COE1 isoform X14

See identical proteins and their annotated locations for XP_009448335.1

Conserved Domains (3) summary

cd01175
Location:255 → 339

IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...

pfam16422
Location:21 → 247

COE1_DBD; Transcription factor COE1 DNA-binding domain

pfam16423
Location:340 → 383

COE1_HLH; Transcription factor COE1 helix-loop-helix domain
XM_063811645.1 → XP_063667715.1 transcription factor COE1 isoform X28
XM_063811643.1 → XP_063667713.1 transcription factor COE1 isoform X27
XM_063811640.1 → XP_063667710.1 transcription factor COE1 isoform X24
XM_063811647.1 → XP_063667717.1 transcription factor COE1 isoform X29
XM_063811646.1 → XP_063667716.1 transcription factor COE1 isoform X28
XM_063811644.1 → XP_063667714.1 transcription factor COE1 isoform X27
XM_063811641.1 → XP_063667711.1 transcription factor COE1 isoform X25
XM_063811639.1 → XP_063667709.1 transcription factor COE1 isoform X23
XM_063811623.1 → XP_063667693.1 transcription factor COE1 isoform X6
XM_063811631.1 → XP_063667701.1 transcription factor COE1 isoform X16
XM_063811622.1 → XP_063667692.1 transcription factor COE1 isoform X5
XM_063811621.1 → XP_063667691.1 transcription factor COE1 isoform X2
XM_063811619.1 → XP_063667689.1 transcription factor COE1 isoform X1
XM_016954132.3 → XP_016809621.1 transcription factor COE1 isoform X9

UniProtKB/TrEMBL

A0A2I3TI72

Related

ENSPTRP00000062030.1

Conserved Domains (3) summary

cd01175
Location:254 → 338

IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...

pfam16422
Location:21 → 247

COE1_DBD; Transcription factor COE1 DNA-binding domain

pfam16423
Location:339 → 382

COE1_HLH; Transcription factor COE1 helix-loop-helix domain
XM_016954131.4 → XP_016809620.1 transcription factor COE1 isoform X15

Conserved Domains (3) summary

cd01175
Location:255 → 339

IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...

pfam16422
Location:21 → 247

COE1_DBD; Transcription factor COE1 DNA-binding domain

pfam16423
Location:340 → 383

COE1_HLH; Transcription factor COE1 helix-loop-helix domain
XM_016954130.3 → XP_016809619.1 transcription factor COE1 isoform X4

Conserved Domains (3) summary

cd01175
Location:262 → 346

IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...

pfam16422
Location:21 → 247

COE1_DBD; Transcription factor COE1 DNA-binding domain

pfam16423
Location:347 → 390

COE1_HLH; Transcription factor COE1 helix-loop-helix domain
XM_063811638.1 → XP_063667708.1 transcription factor COE1 isoform X22
XM_063811630.1 → XP_063667700.1 transcription factor COE1 isoform X13
XM_063811627.1 → XP_063667697.1 transcription factor COE1 isoform X11
XM_016954129.4 → XP_016809618.1 transcription factor COE1 isoform X3

Conserved Domains (3) summary

cd01175
Location:263 → 347

IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...

pfam16422
Location:21 → 247

COE1_DBD; Transcription factor COE1 DNA-binding domain

pfam16423
Location:348 → 391

COE1_HLH; Transcription factor COE1 helix-loop-helix domain
XM_063811636.1 → XP_063667706.1 transcription factor COE1 isoform X21
XM_063811635.1 → XP_063667705.1 transcription factor COE1 isoform X20