U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SPOCK1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 462085, updated on 29-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
SPOCK1provided by VGNC
Official Full Name
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1provided by VGNC
Primary source
VGNC:VGNC:53273
Locus tag
CK820_G0026653
See related
Ensembl:ENSPTRG00000017270
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (134716421..135234359, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (134737974..135256008, complement)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134810027 Neighboring gene ankyrin repeat domain-containing protein 49-like Neighboring gene uncharacterized LOC107974960 Neighboring gene kelch like family member 3 Neighboring gene microRNA mir-874 Neighboring gene heterogeneous nuclear ribonucleoprotein A0

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables collagen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
testican-1
Names
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1
sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    134716421..135234359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_517947.9 → XP_517947.4  testican-1

    See identical proteins and their annotated locations for XP_517947.4

    UniProtKB/TrEMBL
    A0A2J8LRK5, A0A6D2XKZ6, H2QRJ5, K7DRX8
    Related
    ENSPTRP00000029534.2
    Conserved Domains (3) summary
    pfam00086
    Location:313 → 373
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam07648
    Location:139 → 178
    Kazal_2; Kazal-type serine protease inhibitor domain
    cd16237
    Location:198 → 309
    EFh_SPARC_TICN1; EF-hand, extracellular calcium-binding (EC) motif, found in testican-1 (TICN1)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous