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SPP1 secreted phosphoprotein 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 461366, updated on 29-Mar-2024

Summary

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Official Symbol
SPP1provided by VGNC
Official Full Name
secreted phosphoprotein 1provided by VGNC
Primary source
VGNC:VGNC:693
Locus tag
CK820_G0022092
See related
Ensembl:ENSPTRG00000016266
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (89344335..89352061)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (89344308..89352034)

Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107974338 Neighboring gene matrix extracellular phosphoglycoprotein Neighboring gene heat shock protein HSP 90-beta-like Neighboring gene uncharacterized LOC104006127 Neighboring gene U1 spliceosomal RNA Neighboring gene polycystin 2, transient receptor potential cation channel

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ossification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in osteoblast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of bone resorption IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
osteopontin
Names
secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    89344335..89352061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001159959.7 → XP_001159959.1  osteopontin isoform X1

    See identical proteins and their annotated locations for XP_001159959.1

    UniProtKB/TrEMBL
    A0A2I3TT27, A0A2J8MA59, A0A2J8MA62, A0A6D2XGU4
    Related
    ENSPTRP00000092389.1
    Conserved Domains (1) summary
    pfam00865
    Location:21 → 314
    Osteopontin

  2. XM_003950366.5 → XP_003950415.1  osteopontin isoform X2

    See identical proteins and their annotated locations for XP_003950415.1

    UniProtKB/TrEMBL
    A0A2J8MA59, A0A2J8MA73, A0A6D2XCL2, K7BIR8
    Related
    ENSPTRP00000072568.1
    Conserved Domains (1) summary
    pfam00865
    Location:21 → 300
    Osteopontin

  3. XM_003950367.5 → XP_003950416.1  osteopontin isoform X3

    See identical proteins and their annotated locations for XP_003950416.1

    UniProtKB/TrEMBL
    A0A2J8MA59, A0A2J8MA65, A0A6D2XQ22, H2RCV1, K7AF79
    Related
    ENSPTRP00000057851.2
    Conserved Domains (1) summary
    pfam00865
    Location:21 → 287
    Osteopontin

  4. XM_016951849.4 → XP_016807338.1  osteopontin isoform X4

    UniProtKB/TrEMBL
    A0A2J8MA59
Nucleotide Protein
Heading Accession and Version

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