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HTT huntingtin [ Pan troglodytes (chimpanzee) ]

Gene ID: 461084, updated on 3-Apr-2024

Summary

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Official Symbol
HTTprovided by VGNC
Official Full Name
huntingtinprovided by VGNC
Primary source
VGNC:VGNC:48910
Locus tag
CK820_G0041033
See related
Ensembl:ENSPTRG00000015854
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
HD
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
70
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (3430897..3633390)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (3463285..3633370)

Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107974155 Neighboring gene NOP14 nucleolar protein Neighboring gene G protein-coupled receptor kinase 4 Neighboring gene U6 spliceosomal RNA Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC129143677 Neighboring gene Myb/SANT DNA binding domain containing 1 Neighboring gene X antigen family member 3-like Neighboring gene regulator of G protein signaling 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in microtubule-based transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
huntingtin
Names
huntingtin (Huntington disease)
solute carrier family 6 (neurotransmitter transporter, serotonin), member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    3430897..3633390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063808594.1 → XP_063664664.1  huntingtin isoform X3

  2. XM_016951204.3 → XP_016806693.3  huntingtin isoform X1

    UniProtKB/TrEMBL
    A0A2I3RLD9

  3. XM_016951206.4 → XP_016806695.1  huntingtin isoform X4

    UniProtKB/TrEMBL
    A0A2I3SIR3

  4. XM_016951205.4 → XP_016806694.1  huntingtin isoform X2

    UniProtKB/TrEMBL
    A0A2I3SIR3
Nucleotide Protein
Heading Accession and Version

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