MITF melanocyte inducing transcription factor [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: MITFprovided by VGNC
Official Full Name: melanocyte inducing transcription factorprovided by VGNC
Primary source: VGNC:VGNC:10481
Locus tag: CK820_G0004760
See related: Ensembl:ENSPTRG00000015100
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	2	NC_086015.1 (73727276..73955492)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	3	NC_072401.1 (73726994..73955205)

Chromosome 2 - NC_086015.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

Mitf (e-PCR), detects polymorphism
- UniSTS:143873

RH28674 (e-PCR)
- UniSTS:92187

D3S3964 (e-PCR)
- UniSTS:80449

D3S2825E (e-PCR)
- UniSTS:150861

GDB:363545 (e-PCR)
- UniSTS:156771

MITF_7830 (e-PCR)
- UniSTS:466336

SHGC-81156 (e-PCR)
- UniSTS:103340

RH119999 (e-PCR)
- UniSTS:133323

STS-N33393 (e-PCR)
- UniSTS:32973

SHGC-84185 (e-PCR)
- UniSTS:104681

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in melanocyte differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: microphthalmia-associated transcription factor

Names: melanogenesis associated transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

73727276..73955492

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001138876.8 → XP_001138876.3 microphthalmia-associated transcription factor isoform X2
XM_009445840.5 → XP_009444115.3 microphthalmia-associated transcription factor isoform X5
XM_009445841.5 → XP_009444116.3 microphthalmia-associated transcription factor isoform X1
XM_024355557.3 → XP_024211325.2 microphthalmia-associated transcription factor isoform X3
XM_009445842.5 → XP_009444117.3 microphthalmia-associated transcription factor isoform X6
XM_001138521.8 → XP_001138521.3 microphthalmia-associated transcription factor isoform X4