WDR12 WD repeat domain 12 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: WDR12provided by VGNC
Official Full Name: WD repeat domain 12provided by VGNC
Primary source: VGNC:VGNC:3874
Locus tag: CK820_G0014888
See related: Ensembl:ENSPTRG00000012823
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2B

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	13	NC_072411.2 (105111997..105143282, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	Unplaced Scaffold	NW_026546304.1 (103096..134381)

Chromosome 13 - NC_072411.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA Inferred from Electronic Annotation more info	PubMed
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA Inferred from Electronic Annotation more info	PubMed
involved_in ribosome biogenesis	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of PeBoW complex	IEA Inferred from Electronic Annotation more info	PubMed
part_of preribosome, large subunit precursor	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: ribosome biogenesis protein WDR12

Names: WD repeat protein 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001246511.1 → NP_001233440.1 ribosome biogenesis protein WDR12

See identical proteins and their annotated locations for NP_001233440.1

Status: PROVISIONAL

Source sequence(s)

AK305412

UniProtKB/TrEMBL

A0A2I3T0X7, A0A2J8N5H0, A0A6D2WYT8, G2HF98

Related

ENSPTRP00000021923.3, ENSPTRT00000023782.4

Conserved Domains (3) summary

cd00200
Location:100 → 409

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:193 → 255

7WD40; WD40 repeat [structural motif]

pfam08154
Location:4 → 70

NLE; NLE (NUC135) domain

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

105111997..105143282 complement

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GenBank, FASTA, Sequence Viewer (Graphics)