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SUMO1 small ubiquitin like modifier 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 459882, updated on 3-Apr-2024

Summary

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Gene symbol
SUMO1
Gene description
small ubiquitin like modifier 1
Locus tag
CK820_G0014861
See related
Ensembl:ENSPTRG00000012817
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 13 NC_072411.2 (104235737..104267849, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2B NC_072400.1 (104235611..104269113, complement)

Chromosome 13 - NC_072411.2Genomic Context describing neighboring genes Neighboring gene KIAA2012 Neighboring gene proteasome subunit alpha type-2-like Neighboring gene DAZ-associated protein 2-like Neighboring gene large ribosomal subunit protein eL39-like Neighboring gene short transmembrane mitochondrial protein 1-like Neighboring gene small nucleolar RNA SNORD70 Neighboring gene NOP58 ribonucleoprotein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-like protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein sumoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ubiquitin-related modifier 1
Names
SMT3 suppressor of mif two 3 homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    104235737..104267849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001172582.5 → XP_001172582.1  small ubiquitin-related modifier 1 isoform X3

    See identical proteins and their annotated locations for XP_001172582.1

    UniProtKB/TrEMBL
    A0A2J8N5C1, A0A2J8N5D0, A0A6D2XZY5, H2QJ91, K7DGL2
    Related
    ENSPTRP00000021908.5
    Conserved Domains (1) summary
    cd16114
    Location:4 → 71
    Ubl_SUMO1; ubiquitin-like (Ubl) domain found in small ubiquitin-related modifier 1 (SUMO-1) and similar proteins

  2. XM_054680081.2 → XP_054536056.1  small ubiquitin-related modifier 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SG82, A0A2J8N5C2, A0A6D2Y7D6

  3. XM_516035.6 → XP_516035.1  small ubiquitin-related modifier 1 isoform X1

    See identical proteins and their annotated locations for XP_516035.1

    UniProtKB/TrEMBL
    A0A2J8N5B6, A0A2J8N5D1, A0A8I3B0R0, K6ZUL1, K7CF70
    Related
    ENSPTRP00000076502.1
    Conserved Domains (1) summary
    cd16114
    Location:21 → 96
    Ubl_SUMO1; ubiquitin-like (Ubl) domain found in small ubiquitin-related modifier 1 (SUMO-1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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