ABCG1 ATP binding cassette subfamily G member 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: ABCG1provided by VGNC
Official Full Name: ATP binding cassette subfamily G member 1provided by VGNC
Primary source: VGNC:VGNC:3739
Locus tag: CK820_G0022865
See related: Ensembl:ENSPTRG00000013937
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 21

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	22	NC_072420.2 (42875995..42953850)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	21	NC_072419.1 (40528963..40606603)

Chromosome 22 - NC_072420.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

STS_CEB276 (e-PCR)
- UniSTS:255266

G20514 (e-PCR)
- UniSTS:11182

A005U31 (e-PCR)
- UniSTS:11183

ABCG1_3286 (e-PCR)
- UniSTS:462007

D21S1225 (e-PCR)
- UniSTS:11466

SHGC-87665 (e-PCR)
- UniSTS:55548

SHGC-111166 (e-PCR)
- UniSTS:168190

G34692 (e-PCR)
- UniSTS:12543

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ABC-type sterol transporter activity	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cholesterol efflux	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cholesterol homeostasis	IEA Inferred from Electronic Annotation more info	PubMed
involved_in transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: ATP-binding cassette sub-family G member 1

Names: ATP-binding cassette, sub-family G (WHITE), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072420.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

42875995..42953850

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_003319090.6 → XP_003319138.3 ATP-binding cassette sub-family G member 1 isoform X5
XM_514918.8 → XP_514918.5 ATP-binding cassette sub-family G member 1 isoform X6
XM_063803502.1 → XP_063659572.1 ATP-binding cassette sub-family G member 1 isoform X7
XM_003319091.6 → XP_003319139.4 ATP-binding cassette sub-family G member 1 isoform X2
XM_003319093.6 → XP_003319141.3 ATP-binding cassette sub-family G member 1 isoform X1
XM_009435239.5 → XP_009433514.3 ATP-binding cassette sub-family G member 1 isoform X3
XM_063803501.1 → XP_063659571.1 ATP-binding cassette sub-family G member 1 isoform X4