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FDPS farnesyl diphosphate synthase [ Pan troglodytes (chimpanzee) ]

Gene ID: 457366, updated on 3-Apr-2024

Summary

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Official Symbol
FDPSprovided by VGNC
Official Full Name
farnesyl diphosphate synthaseprovided by VGNC
Primary source
VGNC:VGNC:539
Locus tag
CK820_G0045149
See related
Ensembl:ENSPTRG00000001422
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (93875345..93887436, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (137462494..137474391)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene ASH1 like histone lysine methyltransferase Neighboring gene microRNA mir-555 Neighboring gene putative uncharacterized protein RUSC1-AS1 Neighboring gene RUN and SH3 domain containing 1 Neighboring gene pyruvate kinase L/R Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3 Neighboring gene CDC like kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
farnesyl pyrophosphate synthase
Names
farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase)
XP_001160391.1
XP_003949638.1
XP_003949639.1
XP_003949640.1
XP_009431758.1
XP_009431762.1
XP_063668712.1
XP_063668719.1
XP_063668723.1
XP_063668727.1
XP_063668729.1
XP_063668735.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    93875345..93887436 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003949589.4 → XP_003949638.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A2J8Q2V2, K7AMG1
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_063812642.1 → XP_063668712.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A2J8Q2V2

  3. XM_001160391.6 → XP_001160391.1  farnesyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A2J8Q2R0, A0A6D2WRD2, H2Q079, K7AMG1
    Conserved Domains (1) summary
    pfam00348
    Location:108 → 374
    polyprenyl_synt; Polyprenyl synthetase

  4. XM_063812657.1 → XP_063668727.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A2J8Q2R1

  5. XM_063812653.1 → XP_063668723.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A2J8Q2R1

  6. XM_063812659.1 → XP_063668729.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A2J8Q2R1

  7. XM_009433483.5 → XP_009431758.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A2J8Q2V2, K7AMG1
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  8. XM_003949590.6 → XP_003949639.1  farnesyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A2J8Q2R0, A0A6D2WRD2, H2Q079, K7AMG1
    Related
    ENSPTRP00000002407.4
    Conserved Domains (1) summary
    pfam00348
    Location:108 → 374
    polyprenyl_synt; Polyprenyl synthetase

  9. XM_003949591.4 → XP_003949640.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A2J8Q2R1
    Conserved Domains (1) summary
    pfam00348
    Location:1 → 202
    polyprenyl_synt; Polyprenyl synthetase

  10. XM_009433487.5 → XP_009431762.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A2J8Q2V2, K7AMG1
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  11. XM_063812649.1 → XP_063668719.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A2J8Q2R1

  12. XM_063812665.1 → XP_063668735.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A2J8Q2R1
Nucleotide Protein
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